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Chemistry Theses and Dissertations

Theses/dissertations from 2023 2023.

aPKCs role in Neuroblastoma cell signaling cascades and Implications of aPKCs inhibitors as potential therapeutics , Sloan Breedy

Protein Folding Kinetics Analysis Using Fluorescence Spectroscopy , Dhanya Dhananjayan

Affordances and Limitations of Molecular Representations in General and Organic Chemistry , Ayesha Farheen

Institutional and Individual Approaches to Change in Undergraduate STEM Education: Two Framework Analyses , Stephanie B. Feola

Applications in Opioid Analysis with FAIMS Through Control of Vapor Phase Solvent Modifiers , Nathan Grimes

Synthesis, Characterization, and Separation of Loaded Liposomes for Drug Delivery , Sandra Khalife

Supramolecular Architectures Generated by Self-assembly of Guanosine and Isoguanosine Derivatives , Mengjia Liu

Syntheses, Photophysics, & Application of Porphyrinic Metal-Organic Frameworks , Zachary L. Magnuson

Chemical Analysis of Metabolites from Mangrove Endophytic Fungus , Sefat E Munjerin

Synthesis of Small Molecule Modulators of Non-Traditional Drug Targets , Jamie Nunziata

Synthetic Studies of Potential New Ketogenic Molecules , Mohammad Nazmus Sakib

Coupling Chemical and Genomic Data of Marine Sediment-Associated Bacteria for Metabolite Profiling , Stephanie P. Suarez

Enhanced Methods in Forensic Mass Spectrometry for Targeted and Untargeted Drug Analysis , Dina M. Swanson

Investigation of Challenging Transformations in Gold Catalysis , Qi Tang

Diazirines and Oxaziridines as Nitrogen Transfer Reagents in Drug Discovery , Khalilia C. Tillett

Developing New Strategy toward Ruthenium and Gold Redox Catalysis , Chenhuan Wang

Gold-Catalyzed Diyne-ene Cyclization: Synthesis of Hetero Polyaromatic Hydrocarbons and 1,2-Dihydropyridines , Jingwen Wei

Development of Antiviral Peptidomimetics , Songyi Xue

Theses/Dissertations from 2022 2022

Investigating a Potential STING Modulator , Jaret J. Crews

Exploring the Structure and Activity of Metallo-Tetracyclines , Shahedul Islam

Metabolomic Analysis, Identification and Antimicrobial Assay of Two Mangrove Endophytes , Stephen Thompson

Bioactivity of Suberitenones A and B , Jared G. Waters

Developing Efficient Transition Metal Catalyzed C-C & C-X Bond Construction , Chiyu Wei

Measurement in Chemistry, Mathematics, and Physics Education: Student Explanations of Organic Chemistry Reaction Mechanisms and Instructional Practices in Introductory Courses , Brandon J. Yik

Study on New Reactivity of Vinyl Gold and Its Sequential Transformations , Teng Yuan

Study on New Strategy toward Gold(I/III) Redox Catalysis , Shuyao Zhang

Theses/Dissertations from 2021 2021

Design, Synthesis and Testing of Bioactive Peptidomimetics , Sami Abdulkadir

Synthesis of Small Molecules for the Treatment of Infectious Diseases , Elena Bray

Social Constructivism in Chemistry Peer Leaders and Organic Chemistry Students , Aaron M. Clark

Synthesizing Laccol Based Polymers/Copolymers and Polyurethanes; Characterization and Their Applications , Imalka Marasinghe Arachchilage

The Photophysical Studies of Transition Metal Polyimines Encapsulated in Metal Organic Frameworks (MOF’s) , Jacob M. Mayers

Light Harvesting in Photoactive Guest-Based Metal-Organic Frameworks , Christopher R. McKeithan

Using Quantitative Methods to Investigate Student Attitudes Toward Chemistry: Women of Color Deserve the Spotlight , Guizella A. Rocabado Delgadillo

Simulations of H2 Sorption in Metal-Organic Frameworks , Shanelle Suepaul

Parallel Computation of Feynman Path Integrals and Many-Body Polarization with Application to Metal-Organic Materials , Brant H. Tudor

The Development of Bioactive Peptidomimetics Based on γ-AApeptides , Minghui Wang

Investigation of Immobilized Enzymes in Confined Environment of Mesoporous Host Matrices , Xiaoliang Wang

Novel Synthetic Ketogenic Compounds , Michael Scott Williams

Theses/Dissertations from 2020 2020

Biosynthetic Gene Clusters, Microbiomes, and Secondary Metabolites in Cold Water Marine Organisms , Nicole Elizabeth Avalon

Differential Mobility Spectrometry-Mass spectrometry (DMS-MS) for Forensic and Nuclear-Forensic applications , Ifeoluwa Ayodeji

Conversion from Metal Oxide to MOF Thin Films as a Platform of Chemical Sensing , Meng Chen

Asking Why : Analyzing Students' Explanations of Organic Chemistry Reaction Mechanisms using Lexical Analysis and Predictive Logistic Regression Models , Amber J. Dood

Development of Next-Generation, Fast, Accurate, Transferable, and Polarizable Force-fields for Heterogenous Material Simulations , Adam E. Hogan

Breakthroughs in Obtaining QM/MM Free Energies , Phillip S. Hudson

New Synthetic Methodology Using Base-Assisted Diazonium Salts Activation and Gold Redox Catalysis , Abiola Azeez Jimoh

Development and Application of Computational Models for Biochemical Systems , Fiona L. Kearns

Analyzing the Retention of Knowledge Among General Chemistry Students , James T. Kingsepp

A Chemical Investigation of Three Antarctic Tunicates of the Genus Synoicum , Sofia Kokkaliari

Construction of Giant 2D and 3D Metallo-Supramolecules Based on Pyrylium Salts Chemistry , Yiming Li

Assessing Many-Body van der Waals Contributions in Model Sorption Environments , Matthew K. Mostrom

Advancing Equity Amongst General Chemistry Students with Variable Preparations in Mathematics , Vanessa R. Ralph

Sustainable Non-Noble Metal based Catalysts for High Performance Oxygen Electrocatalysis , Swetha Ramani

The Role of aPKCs and aPKC Inhibitors in Cell Proliferation and Invasion in Breast and Ovarian Cancer , Tracess B. Smalley

Development of Ultrasonic-based Ambient Desorption Ionization Mass Spectrometry , Linxia Song

Covalent Organic Frameworks as an Organic Scaffold for Heterogeneous Catalysis including C-H Activation , Harsh Vardhan

Optimization of a Digital Ion Trap to Perform Isotope Ratio Analysis of Xenon for Planetary Studies , Timothy Vazquez

Multifunctional Metal-Organic Frameworks (MOFs) For Applications in Sustainability , Gaurav Verma

Design, Synthesis of Axial Chiral Triazole , Jing Wang

The Development of AApeptides , Lulu Wei

Chemical Investigation of Floridian Mangrove Endophytes and Antarctic Marine Organisms , Bingjie Yang

Theses/Dissertations from 2019 2019

An Insight into the Biological Functions, the Molecular Mechanism and the Nature of Interactions of a Set of Biologically Important Proteins. , Adam A. Aboalroub

Functional Porous Materials: Applications for Environmental Sustainability , Briana Amaris Aguila

Biomimetic Light Harvesting in Metalloporphyrins Encapsulated/Incorporated within Metal Organic Frameworks (MOFs). , Abdulaziz A. Alanazi

Design and Synthesis of Novel Agents for the Treatment of Tropical Diseases , Linda Corrinne Barbeto

Effect of Atypical protein kinase C inhibitor (DNDA) on Cell Proliferation and Migration of Lung Cancer Cells , Raja Reddy Bommareddy

The Activity and Structure of Cu2+ -Biomolecules in Disease and Disease Treatment , Darrell Cole Cerrato

Simulation and Software Development to Understand Interactions of Guest Molecules inPorous Materials , Douglas M. Franz

Construction of G-quadruplexes via Self-assembly: Enhanced Stability and Unique Properties , Ying He

The Role of Atypical Protein Kinase C in Colorectal Cancer Cells Carcinogenesis , S M Anisul Islam

Chemical Tools and Treatments for Neurological Disorders and Infectious Diseases , Andrea Lemus

Antarctic Deep Sea Coral and Tropical Fungal Endophyte: Novel Chemistry for Drug Discovery , Anne-Claire D. Limon

Constituent Partitioning Consensus Docking Models and Application in Drug Discovery , Rainer Metcalf

An Investigation into the Heterogeneity of Insect Arylalkylamine N -Acyltransferases , Brian G. O'Flynn

Evaluating the Evidence Base for Evidence-Based Instructional Practices in Chemistry through Meta-Analysis , Md Tawabur Rahman

Role of Oncogenic Protein Kinase C-iota in Melanoma Progression; A Study Based on Atypical Protein Kinase-C Inhibitors , Wishrawana Sarathi Bandara Ratnayake

Formulation to Application: Thermomechanical Characterization of Flexible Polyimides and The Improvement of Their Properties Via Chain Interaction , Alejandro Rivera Nicholls

The Chemical Ecology and Drug Discovery Potential of the Antarctic Red Alga Plocamium cartilagineum and the Antarctic Sponge Dendrilla membranosa , Andrew Jason Shilling

Synthesis, Discovery and Delivery of Therapeutic Natural Products and Analogs , Zachary P. Shultz

Development of α-AA peptides as Peptidomimetics for Antimicrobial Therapeutics and The Discovery of Nanostructures , Sylvia E. Singh

Self-Assembly of 2D and 3D Metallo-Supramolecules with Increasing Complexity , Bo Song

The Potential of Marine Microbes, Flora and Fauna in Drug Discovery , Santana Alexa Lavonia Thomas

Design, Synthesis, and Self-Assembly of Supramolecular Fractals Based on Terpyridine with Different Transition Metal Ions , Lei Wang

Theses/Dissertations from 2018 2018

Fatty Acid Amides and Their Biosynthetic Enzymes Found in Insect Model Systems , Ryan L. Anderson

Interrogation of Protein Function with Peptidomimetics , Olapeju Bolarinwa

Characterization of Nylon-12 in a Novel Additive Manufacturing Technology, and the Rheological and Spectroscopic Analysis of PEG-Starch Matrix Interactions , Garrett Michael Craft

Synthesis of Novel Agents for the treatment of Infectious and Neurodegenerative diseases , Benjamin Joe Eduful

Survey research in postsecondary chemistry education: Measurements of faculty members’ instructional practice and students’ affect , Rebecca E. Gibbons

Design, Synthesis, Application of Biodegradable Polymers , Mussie Gide

Conformational Fluctuations of Biomolecules Studied Using Molecular Dynamics and Enhanced Sampling , Geoffrey M. Gray

Analysis and New Applications of Metal Organic Frameworks (MOF): Thermal Conductivity of a Perovskite-type MOF and Incorporation of a Lewis Pair into a MOF. , Wilarachchige D C B Gunatilleke

Chemical Investigation of Bioactive Marine Extracts , Selam Hagos

Optimizing Peptide Fractionation to Maximize Content in Cancer Proteomics , Victoria Izumi

Germania-based Sol-gel Coatings and Core-shell Particles in Chromatographic Separations , Chengliang Jiang

Synthesis, Modification, Characterization and Processing of Molded and Electrospun Thermoplastic Polymer Composites and Nanocomposites , Tamalia Julien

Studies Aimed at the Synthesis of Anti-Infective Agents , Ankush Kanwar

From Florida to Antarctica: Dereplication Strategies and Chemical Investigations of Marine Organisms , Matthew A. Knestrick

Sorbent Enrichment Performance of Aromatic Compounds from Diluted Liquid Solution , Le Meng

Development of Bioactive Peptidomimetics , Fengyu She

Azamacrocyclic-based Frameworks: Syntheses and Characterizations , Chavis Andrew Stackhouse

Structure-based Design, Synthesis and Applications of a New Class of Peptidomimetics: 'Y -AA Peptides and Their Derivatives , Ma Su

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Home > Sciences and Arts > Dept. of Chemistry > Dissertations and Master's Theses

Dept. of Chemistry Dissertations and Master's Theses

Explore our collection of dissertations and master's theses from the Department of Chemistry below.

Theses/Dissertations/Reports from 2024 2024

Chemical Synthesis of Sensitive DNA , Komal Chillar

Small Fluorescent Glycoconjugates as Imaging Agents for GLUT Sugar Transporters , Adelina Oronova

SYNTHESIS OF CHLORINATED DEOXYGUANOSINE NUCLEOTIDES AT THE N2 CARBON TO PREVENT SUBSTITUTION ERRORS DURING THE CAPPING STEP FOR THE CHEMICAL SYNTHESIS OF LONG OLIGODEOXYNUCLEOTIDES , J. Parker F. Harstad

Theses/Dissertations/Reports from 2023 2023

DETECTION AND MUTATIONAL ANALYSIS OF A HUMAN PROTEIN ASSOCIATED WITH CANCER AND CARDIOVASCULAR DISEASES , Priyanka Dipak Kadav

EXPLORING TURN-ON PROBES FOR GLUTs TARGETING AND ADVANCING SAFETY EDUCATION IN THE CHEMICAL SCIENCES: A TWO-PART DISSERTATION , Monica Mame Soma Nyansa

MULTILEVEL COMPUTATIONAL INVESTIGATION INTO THE CATALYTIC MECHANISMS OF MATRIX METALLOPROTEINASE-1 AND FAT MASS AND OBESITY-ASSOCIATED ENZYME , Ann Varghese

MULTISCALE MOLECULAR MODELING STUDIES OF THE DYNAMICS AND CATALYTIC MECHANISMS OF IRON(II)- AND ZINC(II)-DEPENDENT METALLOENZYMES , Sodiq O. Waheed

ORIGINS OF OPTICAL PROPERTIES IN NATURAL ORGANIC MATTER AND FLUORESCENT ANIMALS , Nastaran Khademimoshgenani

Small Molecules Targeting Fructose Transport , Nazar Gora

UHPLC/FT-MS NON-TARGETED SCREENING APPROACH FOR BIOMASS BURNING ORGANIC AEROSOL AND LIQUID SMOKE AS BIOMASS BURNING ORGANIC AEROSOL SURROGATE , D.M.R. Thusitha Dinusha Kumarihami Divisekara

Theses/Dissertations/Reports from 2022 2022

INTERFACIAL OXIDATION REACTIONS AND FILM NUCLEATION ON IRON SURFACES IN COMPLEX ENVIRONMENTS USING SPECTROSCOPY AT THE LIQUID/SOLID AND GAS/SOLID INTERFACE , Adambarage Chathura de Alwis

ISOLATION AND CHROMATOGRAPHIC SEPARATION OF CYTOTOXIC PLANT COMPOUNDS , Michael C. Hromada

ISOLATION, PURIFICATION, AND CHARACTERIZATION OF A NEW MANNOSE-BINDING PLANT LECTIN THAT RECOGNIZES FUNGAL ANTIGENS , Jessica C. Krycia

MULTILEVEL COMPUTATIONAL INVESTIGATION INTO THE DYNAMICS AND REACTION MECHANISMS OF NON-HEME IRON AND 2-OXOGLUTARATE DEPENDENT ENZYMES , Shobhit Sanjeev Chaturvedi

NON-CHROMATOGRAPHIC OLIGONUCLEOTIDE PURIFICATION AND AUTOMATED POLYETHYLENEGLYCOL SYNTHESIS , Dhananjani N. A. M. Eriyagama

STRUCTURAL AND FUNCTIONAL ANALYSIS OF A NEW CYTOLYSIN , Jared L. Edwards

SYNTHESIS AND DEVELOPMENT OF FLUORESCENT CARBON DOTS FOR SENSING AND BIOIMAGING APPLICATIONS , Parya Siahcheshm

Theses/Dissertations/Reports from 2021 2021

BASE-LABILE PROTECTING GROUPS FOR STEPWISE PEG SYNTHESIS , Logan D. Mikesell

COBALT, MOLYBDENUM, AND NICKEL COMPLEXES, NATURAL ZEOLITES, EPOXIDATION, AND FREE RADICAL REACTIONS , Nicholas K. Newberry

DESIGN AND DEVELOPMENT OF NEAR-INFRARED FLUORESCENT PROBES FOR SENSING pH, HYPOXIA AND PEROXYNITRITE , Shulin Wan

DETERMINATION OF MOLECULAR MARKERS OF VACCINIUM BERRY STANDARD REFERENCE MATERIALS THROUGH DIFFERENTIAL ANALYSIS WITH ULTRAHIGH RESOLUTION LC/MS , Abby Mikolitis

EXPLORING GLUT5 TARGETING FOR CANCER DIAGNOSIS AND THERAPY , Avik Ghosh

High-resolution molecular characterization of complex environmental mixtures: Aquatic dissolved organic matter and wildfire-influenced aerosol , Amna Ijaz

INVESTIGATING REDOX CHEMISTRY OF GRAPHITE, IRON OXIDE & IRON SURFACES , Mikhail Trought

Theses/Dissertations/Reports from 2020 2020

EXPLORING SUBSTRATE SPECIFICITY OF FRUCTOSE TRANSPORTERS EN ROUTE TO GLUT SPECIFIC PROBES FOR BIOCHEMICAL AND BIOMEDICAL APPLICATIONS , Vagarshak Vigenovich Begoyan

Macromolecular strategies for discovering disease-related proteins and new therapeutic agents , Christina Welch

RATIOMETRIC NEAR-INFRARED FLUORESCENT PROBES FOR THE SENSITIVE DETECTION OF INTRACELLULAR pH AND BIO-THIOLS IN LIVE CELLS , Shuai Xia

Theses/Dissertations/Reports from 2019 2019

Characterizing the physicochemical properties of TDP-43 protein and Acetylated Amyloid β peptides to discern its role in neurodegenerative diseases , Rashmi Adhikari

EXTREME MOLECULAR DIVERSITY IN BIOMASS BURNING ATMOSPHERIC ORGANIC AEROSOL OBSERVED THROUGH ULTRAHIGH RESOLUTION MASS SPECTROMETRY , Matthew Brege

METHOD CONSIDERATIONS FOR COMPOUND IDENTIFICATION IN COMPLEX MIXTURES USING ELECTROSPRAY IONIZATION ULTRAHIGH RESOLUTION MASS SPECTROMETRY , Tyler Leverton

MOLECULAR CHARACTERIZATION OF FREE TROPOSPHERIC ORGANIC AEROSOL AND THE DEVELOPMENT OF COMPUTATIONAL TOOLS FOR MOLECULAR FORMULA ASSIGNMENT , Simeon Schum

NEAR-INFRARED FLUORESCENT PROBES FOR SENSITIVE DETERMINATION OF LYSOSOMAL & MITOCHONDRIAL pH IN LIVE CELLS , Wafa Mazi

SMALL MOLECULE-BASED FLUORESCENT MOLECULAR PROBES FOR FACILITATING BIOMEDICAL RESEARCH: RATIONAL DESIGN AND BIOIMAGING APPLICATIONS , Xin Yan

Synthesis of Oligodeoxynucleotides Containing Sensitive Electrophiles , Shahien Shahsavari

TOWARDS THE DISCOVERY OF OLIGONUCLEOTIDE CROSS-LINKING AGENTS , Bhaskar Halami

Theses/Dissertations/Reports from 2018 2018

DEVELOPING NOVEL MOLECULAR IMAGING AGENTS FOR SHEDDING LIGHT ON OXIDATIVE STRESS , Shanshan Hou

DEVELOPMENT OF NEAR-INFRARED FLUORESCENT PROBES FOR MONITORING LYSOSOMAL pH CHANGES , Jianheng Bi

DIRECT MEASUREMENT OF RUPTURE FORCE OF SINGLE TRIAZOLE MOLECULE BY ATOMIC FORCE MICROSCOPE AND SOLID PHASE SYNTHESIS OF MONODISPERSE POLYETHYLENE GLYCOLS , Ashok Khanal

NOVEL FLUORESCENT PROBES FOR VISUALIZATION OF pH CHANGES AND Zn (Ⅱ) IONS IN LIVE CELLS , Mingxi Fang

PHYSICOCHEMICAL, SPECTROSCOPIC PROPERTIES, AND DIFFUSION MECHANISMS OF SMALL HYDROCARBON MOLECULES IN MOF-74-MG/ZN: A QUANTUM CHEMICAL INVESTIGATION , Gemechis Degaga

Theses/Dissertations/Reports from 2017 2017

DEVELOPMENT OF A SYSTEM TO STUDY THE EFFECTS OF HISTONE MUTATIONS AND POST-TRANSLATIONAL MODIFICATIONS ON NUCLEOSOME STRUCTURE VIA ATOMIC FORCE MICROSCOPY , Chelsea Nikula

Fluorescent Probe Development for Fructose Specific Transporters in Cancer , Joseph Fedie

GLYCOBIOLOGICAL STUDIES THAT CAN HELP THYROID CANCER DETECTION AND THERAPY , Ni Fan

Heterologous Expression and Purification of Full-Length Human Polybromo-1 Protein , Sarah Hopson

NOVEL BIOCOMPOSITES AND NANOFIBERS BASED ON MODIFIED BIOMASS MATERIALS TO FACILITATE GREENER APPLICATIONS , Soha Albukhari

Theses/Dissertations/Reports from 2016 2016

Effect of disulfide bond scrambling on protein stability, aggregation, and cytotoxicity , Colina Dutta

FORMATION AND DEACTIVATION OF TRIMETHYLALUMINUM IN AIR CONDITIONER SIMULATOR AND MCM-41 SUPPORTED SILVER NANOPARTICLES FOR OXIDATION OF OLEFINS , Zhichao Chen

NEAR-INFRARED WATER-SOLUBLE FLUORESCENT PROBES FOR THE DETECTION OF LYSOSOMAL pH AND Zn (II) IONS , Cong Li

Novel Carbohydrate-Dependent Biological Properties of Human Health Related Lectins and Glycoconjugates , Melanie Talaga

SENSING AND MAPPING OF SURFACE HYDROPHOBICITY OF PROTEINS BY FLUORESCENT PROBES , Nethaniah Dorh

THE EFFECT OF POSTTRANSLATIONAL MODIFICATIONS ON PROTEIN AGGREGATION, MORPHOLOGY, AND TOXICITY , Mu Yang

Reports/Theses/Dissertations from 2015 2015

BIOLOGICAL MATERIALS: PART A. TEMPERATURE-RESPONSIVE POLYMERS AND DRUG DELIVERY AND PART B. POLYMER MODIFICATION OF FISH SCALE AND THEIR NANO-MECHANICAL PROPERTIES , Xu Xiang

DESIGN AND DEVELOPMENT OF BODIPY-BASED FLUORESCENT PROBES FOR SENSING AND IMAGING OF CYANIDE, Zn (II) IONS, LYSOSOMAL pH AND CANCER CELLS , Jingtuo Zhang

Extracellular expression of alkaline phytase in Pichia pastoris and Development of Nuclear Magnetic Resonance spectroscopy methods for structural investigation of inositol polyphosphates , Sasha Teymorian

ON THE PROTECTIVE PROPERTIES OF GLYCINE BASED OSMOLYTES IN A THIOL REDUCING ENVIRONMENT , John Michael Hausman

SYNTHETIC OLIGODEOXYNUCLEOTIDE PURIFICATION VIA CATCHING BY POLYMERIZATION , Suntara Fueangfung

Reports/Theses/Dissertations from 2014 2014

DESIGN, SYNTHESIS AND APPLICATIONS OF FLUORESCENT AND ELECTROCHEMICAL PROBES , Giri K. Vegesna

EVOLUTION OF SELECTED ISOPRENE OXIDATION PRODUCTS IN DARK AQUEOUS AMMONIUM SULFATE , D.M. Ashraf Ul Habib

MOLECULAR CHARACTERIZATION OF ATMOSPHERIC ORGANIC MATTER IN BIOGENIC SECONDARY ORGANIC AEROSOL, AMBIENT AEROSOL AND CLOUDS , Yunzhu Zhao

NON-CHROMATOGRAPHIC PURIFICATION OF SYNTHETIC BIO-OLIGOMERS , Durga Prasad Pokharel

PURIFICATION AND CARBOHYDRATE BINDING PROPERTIES OF TWO NEW PLANT PROTEINS , Robert K. Brown

Reports/Theses/Dissertations from 2013 2013

ACETYL RADICAL IN TOBACCO SMOKE: DETECTION, QUANTIFICATION AND SIMULATION , Na Hu

CHARACTERIZATION OF TWO NOVEL MONOCOT MANNOSE BINDING LECTINS PURIFIED BY ‘CAPTURE AND RELEASE’ METHOD , Ashli L. Fueri

Development and characterization of fluorescent pH sensors based on porous silica and hydrogel support matrices , Qili Hu

Enhancement of heterologous expression of alkaline phytase in Pichia pastors , Mimi Yang

Modern Computational Chemistry Methods for Prediction of Ground- and Excited-State Properties in Open-Shell Systems , Nina Tyminska

Oligodeoxynucleotide synthesis using protecting groups and a linker cleavable under non-nucleophilic conditions , Xi Lin

STUDIES OF FUNCTIONALIZED NANOPARTICLES FOR SMART SELF-ASSEMBLY AND AS CONTROLLED DRUG DELIVERY , Xiaochu Ding

THERMORESPONSIVE PROPERTIES OF GOLD HYBRID NANOPARTICLES OF POLY(DI(ETHYLENE GLYCOL) METHYL ETHER METHACRYLATE) (PDEGMA) AND ITS BLOCK COPOLYMERS WITH DIFFERENT ANCHORING REGIMES , Martha Juliana Barajas Meneses

TUNING FLUORESCENT PROBES FOR BIOMEDICAL APPLICATIONS , Nazmiye Bihter Yapici

Reports/Theses/Dissertations from 2012 2012

Biological materials : Part A. tuning LCST of raft copolymers and gold/copolymer hybrid nanoparticles and Part B. biobased nanomaterials , Ning Chen

Characterization of water-soluble organic compounds in ambient aerosol using ultrahigh-resolution elctrospray ionization fourier transform ion cyclotron resonance mass spectrometry. , Parichehr Saranjampour

COORDINATION CHEMISTRY OF BIS(BENZYL)PHOSPHINATE , John S. Maass

DESIGN AND SYNTHESIS OF NOVEL SYNTHETIC ANTIOXIDANTS FOR THE TREATMENT OF OXIDATIVE STRESS RELATED DISEASES , Srinivas Rao Mandalapu

Indole based antioxidants for the treatment of ischemia reperfusion injury , Andrew Chapp

Performance evaluation and characterization of symmetric capacitors with carbon black, and asymmetric capacitors using a carbon foam supported nickel electrode , JinJin Wang

Soft Lewis acid catalyzed cycloisomerization of oxo-alkynes and enynes , Zezhou Wang

Reports/Theses/Dissertations from 2011 2011

Multimetallic complexes based on phosphine- and phosphine oxide- appended p -hydroquinones , Louis R. Pignotti

Performance evaluation of a novel asymmetric capacitor using a light-weight, carbon foam supported nickel electrode , Padmanaban Sasthan Kuttipillai

Structural characterization of water-soluble atmospheric organic matter by ultrahigh-resolution mass spectrometry , Jeffrey P. LeClair

Syntheses and structures of molybdenum and tungsten complexes capable of epoxidaton and copper coordination polymers and dendrimers , Linsheng Feng

Synthesis of chiral ferrosalen ligands and their applications in asymmetric catalysis , Xiang Zhang

Reports/Theses/Dissertations from 2010 2010

Syntheses and characterization of monomeric Mo(VI) complexes with bidentate phosphine oxide ligands and dimeric and tetrameric Mo(V) clusters with benzoic acid and phosphinic acid derivatives, containing MoO 2 , Mo 2 O 2 ( μ -O) 2 and Mo 4 O 4 ( μ 3 -O) 4 , Soumyashree Sreehari

Reports/Theses/Dissertations from 2009 2009

Molecular interaction between perthiolated [beta]-cyclodextrin (CD) and the guests molecules adamantaneacetic acid (AD) and ferroceneacetic acid (FC); and the effect of the interaction on the electron transition of CD anchored particles , Ming Ning

Reports/Theses/Dissertations from 2005 2005

Sulfoxides as an intramolecular sulfenylating agent for indoles and diverse applications of the sulfide-sulfoxide redox cycle in organic chemistry , Parag V. Jog

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Home > Chemistry > Dissertations, Theses, and Student Research

Chemistry, Department of

Department of chemistry: dissertations, theses, and student research.

Halide Exchange and Transport in Halide Perovskite Lattices , Temban Acha Billy

Synthesis and Study of High-Spin Stable Organic Radicals for Electrical Conductors and Mannosamine Nitroxide for MRI Contrast Agents , Shuyang Zhang

Designing Experiments: The Impact of Peer Review Structure on Organic Chemistry Students' Experimental Designs , Katie Patterson

Study of halide gradient formation via solution-solid halide exchange in crystalline CH 3 NH 3 PbBr 3 thin films , Behnaz Akbari

Oxygen Binding Thermodynamics of Human Hemoglobin in the Red Blood Cell , Kyle K. Hill

Developing Techniques for the Identification of Non-Canonical RNA Pairing and Analysis of LC-MS Datasets , Christopher Jurich

Surface Functionalization of Elastomers for Tunable Crystal Growth and Smart Adhesives , John Kapitan

Issue of False Amphetamine Field Test Positives Caused By Sugar. Use of Baeyer Test as a Secondary Test Solution. , Reed A. Knutson, Jennah Duncan, Kara Peightal, and Samuel Thomas

Harnessing Surface Chemistry and Instabilities in Silicone Elastomers to Synthesize Adaptive Systems with Mechanically Tunable Surface Properties and Functionality , Ali Jamal Mazaltarim

How Oxygen-Binding Affects Structural Evolution of Even-Sized Gold Anion Clusters. (Size Range 20 to 34) , David Brunken-Deibert

Analysis of Hydroxychloroquine Interaction with Serum Proteins by High Performance Affinity Chromatography , Kyungah Suh, Sadia Sharmeen, and David S. Hage

The Application and Development of Metabolomics Methodologies for the Profiling of Food and Cellular Toxicity , Jade Woods

Evaluation of the Overall Binding of Acetohexamide and Tolbutamide with Methyl Glyoxal-Modified HSA by High-Performance Affinity Chromatography , Ashley G. Woolfork and David S. Hage

C(sp2)-C(sp3) Cross-Coupling of Aryl Halides and Active C(sp3)-H Bonds via Dual Catalysis: Organic Photocatalysis/Nickel Redox Catalysis , Nicholas Armada

Phosphonate-Directed Catalytic Asymmetric Hydroboration: Synthesis of Functionalized Chiral Secondary and Tertiary Boronic Esters and Mechanistic Insights , Suman Chakrabarty

COMPUTATIONAL STUDIES OF THERMAL PROPERTIES AND DESALINATION PERFORMANCE OF LOW-DIMENSIONAL MATERIALS , Yang Hong

QUANTUM CHEMICAL CALCULATIONS APPLIED TO SOMO-HOMO CONVERSION AND VIBRATIONALLY AVERAGED NMR SHIELDING PARAMETERS , Erik Johnson

Design and Synthesis of Stable Aminyl and Nitroxide Radical Precursors , Joshua Bryan Lovell

Development of Nanomaterial Supports for the Study of Affinity-Based Analytes Using Ultra-Thin Layer Chromatography , Allegra Pekarek

ANALYSIS OF DRUG-PROTEIN INTERACTIONS DURING DIABETES BY HIGH-PERFORMANCE AFFINITY CHROMATOGRAPHY , Pingyang Tao

Electropolymerization and Characterization of Thin Film Dielectrics , Christopher White II

Synthesis, Characterization, and Catalytic Activity of Copper Palladium Oxide Solid Solutions. , Gregory L. Christensen

GLOBAL MINIMUM SEARCH AND CARBON MONOXIDE BINDING STUDIES OF NOVEL GOLD NANOCLUSTERS , Navneet S. Khetrapal

Mass Spectrometry and Nuclear Magnetic Resonance in the Chemometric Analysis of Cellular Metabolism , Eli Riekeberg

Ultrafast Affinity Extraction and High-Performance Affinity Chromatography Applications for Measuring Free Drug Fractions: Interactions of Sulfonylurea Drugs with Normal and Glycated Human Serum Albumin , Bao Yang

DEVELOPMENT OF ENTRAPMENT COLUMNS FOR THE STUDY OF AFFINITY BASED ANALYSIS OF DRUG-PROTEIN INTERACTIONS , Shiden T. Azaria

Chemical Vapor Deposition of Two-Dimensional Materials and Heterostructures , Alex J. Boson

Bioinformatic and Biophysical Analyses of Proteins , Jonathan Catazaro

Developing Functionalized Peroxide Precursors for the Synthesis of Cyclic and Spirocyclic Ethers , Anna J. Diepenbrock

Decarboxylative Elimination for the Systhesis of Olefins Via Photoredox/Cobalt Dual Catalysis , Renjie Gui

Enantioselective γ- and δ -Borylation of Unsaturated Carbonyl Derivatives: Synthesis, Mechanistic Insights, and Applications. , Gia L. Hoang

Entrapment of proteins in high-performance affinity columns for chromatographic studies of drug-protein interactions , Saumen Poddar, Elliott Rodriguez, Shiden Azaria, and David S. Hage

Genetic Code Expansion in Biochemical Investigations and Biomedical Applications , Nanxi Wang

Applying the Diffusion of Innovation Theory to Characterize STEM Faculty Attending Professional Development Programs , Dihua Xue

Who is attending pedagogical workshops? Applying the Innovation Diffusion to Characterize Faculty Attendees , Victoria Dihua Xue, Trisha Vickrey, and Marilyne Stains

Genetically Encoded Fluorescent Protein Biosensor for Nitric Oxide , Wenjia Zhai

STUDIES IN DIRECTED CATALYTIC ASYMMETRIC HYDROBORATION OF 1,2-DISUBSTITUTED UNSATURATED AMIDE , Shuyang Zhang

Synthesis and Applications of Cyclobutenes , Benjamin Enns

Binding of Oxygen to Human Hemoglobin Within the Erythrocyte Using ICAM Spectrophotometry , Kyle K. Hill

Design and Synthesis of Novel Octacarboxy Porphyrinic Metal-Organic Frameworks , Jacob A. Johnson

Development of a Direct Activity Probe for Rho-Associated Protein Kinase , Maia Kelly

Thermolysis of Hypervalent Iodine Complexes: Synthesis of Fluorinated Radiotracers for Positron Emission Tomography and Synthesis of Quaternary α-Alkyl α-Aryl Amino Acids , Jayson J. Kempinger

Synthesis and Applications of Lanthanide Sulfides and Oxides , Christopher Marin

SELECTIVE IODINATION USING DIARYLIODONIUM SALTS , William H. Miller IV

MOLECULAR MECHANISM FOR THE BIOSYNTHESIS AND REGULATION OF SECONDARY METABOLITES IN LYSOBACTER , Simon Tesfamichael Tombosa

STUDIES IN ASYMMETRIC CATALYSIS: SUPRAMOLECULAR CATALYSIS AND BORANE-ASSISTED HYDROGENATION , Kazuya Toyama

Molecular Mechanism for the Biosynthesis of Antifungal HSAF and Antibacterial WAP-8294A2 , Haotong Chen

Toward the Probing of DHQS Activity by Protein Engineering through the Introduction of Unnatural Amino Acids and the Selection of tRNA/tRNA Synthetase Pairs , Shaina E. Ives

Toward an Expanded Role for Collision-Induced Dissociation in Glycoproteomic Analysis , Venkata Kolli

New Methods for Synthesis of Organic Peroxides and Application of Peroxide Electrophiles to Synthesis of Functionalized Ethers , Shiva Kumar Kyasa

Chromatographic Analysis of Drug-Protein Interactions During Diabetes and Characterization of Human Serum Albumin Through Multidimensional Mass Spectrometry , Ryan E. Matsuda

THREE-DIMENSIONAL SCAFFOLDS OF GRAPHENE, CARBON NANOTUBES AND TRANSITION-METAL OXIDES FOR APPLICATIONS IN ELECTRONICS, SENSORS AND ENERGY STORAGE , Gilbert N. Mbah

TOWARD THE MEASUREMENT OF BIODISTRIBUTION OF 18 F-LABELED INDUSTRIAL CHEMICALS WITH POSITRON EMISSION TOMOGRAPHY (PET) , Katelyenn S. McCauley

Investigations into the Molecular Mechanisms of Bacterial Pathogen-Host Interactions: Construction of a Dual Plasmid System for Incorporation of Unnatural Amino Acids into Pseudomonas syringae pv. tomato DC3000 , Scotty D. Raber

Applications of High Performance Affinity Chromatography with High Capacity Stationary Phases Made by Entrapment , John A. Vargas Badilla

Uses of Diaryliodonium Salts and Methods for their Synthesis , Jordan M. Veness

The intersection of nuclear magnetic resonance and quantum chemistry , Yali Wang

Chemometric and Bioinformatic Analyses of Cellular Biochemistry , Bradley Worley

Analysis of Free Solute Fractions and Solute-Protein Interactions Using Ultrafast Affinity Extraction and Affinity Microcolumns , Xiwei Zheng

The 8-Silyloxyquinoline Scaffold as a Versatile Platform for the Sensitive Detection of Aqueous Fluoride , Xinqi Zhou

Nanostructured Cerium Oxide Based Catalysts: Synthesis, Physical Properties, and Catalytic Performance , Yunyun Zhou

Hydrolytically Stable Analogues of Sugar Phosphates and a Miniaturized in Situ Enzymatic Screen , Xiang Fei

Development and Application of Combined Quantum Mechanical and Molecular Mechanical Methods , Rui Lai

Syntheses of Aminyl Diradicals and Nitroxide Tetra- and Octaradicals , Arnon Olankitwanit

Analysis of Drug Interactions with Lipoproteins by High Performance Affinity Chromatography , Matthew R. Sobansky

Studies in Asymmetric Synthesis: Supramolecular Catalysis, C-H Activation, and D-Cycloserine Synthesis , Nathan C. Thacker

Application of Nuclear Magnetic Resonance Based Metabolomics to Study the Central Metabolism of Staphylococci , Bo Zhang

IMPLEMENTATION AND APPLICATION OF THE MMFF94 FORCE FIELD , Hongbo Zhu

The Electrochemical Analysis of Bovine Bone Derived Supercapacitors, Organic Peroxide Explosives, and Conducting Polymer Nanojunctions , Paul Goodman

The Development and Applications of NMR Metabolomics Analysis of Bacterial Metabolomes , Steven M. Halouska

Utilizing NMR Spectroscopy and Molecular Docking as Tools for the Structural Determination and Functional Annotation of Proteins , Jaime Stark

A. Catalysis of CO-PROX by Water-Soluble Rhodium Fluorinated Porphyrins B. Studies toward Fluorination of Electron Rich Aromatics by Nucleophilic Fluoride , Shri Harsha Uppaluri

Regulation of Secondary Metabolism in Lysobacter enzymogenes : Studies of Intercellular and Intracellular Signaling , Stephen J. Wright

DIRECTED CATALYTIC ASYMMETRIC HYDROBORATION OF 1,1-DISUBSTITUTED ALKENES , Mohammad Odeh Bani Khaled

I. Synthesis of β-Sitosterol and Phytosterol Esters; II. New Methodology for Singlet Oxygen Generation from 1,1-Dihydroperoxides , Jiliang Hang

Experimental and Theoretical Studies in Solid-state Nuclear Magnetic Resonance , Monica N. Kinde

Experimental and Theoretical Studies in Nuclear Magnetic Resonance , John D. Persons

RHODIUM-CATALYZED HYDROBORATION OF 1,1-DISUBSTITUTED ALKENES , Scott A. Pettibone

INVESTIGATIONS OF INTER- AND INTRAMOLECULAR C-O BOND FORMING REACTIONS OF PEROXIDE ELECTROPHILES , Benjamin W. Puffer

The Use of Rhenium (VII) Oxide as a Catalyst for the Substution of Hemiacetals , Michael W. Richardson

Characterization of Novel Macrocyclic Polyether Modified Pseudostationary Phases for use in Micellar Electrokinetic Chromatography and Development of a Chemiluminescence Presumptive Assay for Peroxide-based Explosives , Raychelle Burks

Preparation and Characterization of Biomimetic Hydroxyapatite-Resorbable Polymer Composites for Hard Tissue Repair , Kristopher R. Hiebner

High Yield Synthesis of Positron Emission Tomography Ligands for Metabotropic Glutamate Receptor Imaging , Saraanne E. Hitchcock

Optimization and Implementation of Entrapment: A Novel Immobilization Technique for High-performance Affinity Chromatography , Abby J. Jackson

Fabrication and Catalytic Property of Cerium Oxide Nanomaterials , Keren Jiang

Affinity Chromatography in Environmental Analysis and Drug-Protein Interaction Studies , Efthimia Papastavros

Development and Optimization of Organic Based Monoliths for Use in Affinity Chromatography , Erika L. Pfaunmiller

I. An Improved Procedure for Alkene Ozonolysis. II. Exploring a New Structural Paradigm for Peroxide Antimalarials. , Charles Edward Schiaffo

QUANTUM MECHANICAL AND MOLECULAR MECHANICAL STUDY OF SOLVENT EFFECTS , Dejun Si

Resorbable Polymer-Hydroxyapatite Composites for Bone Trauma Treatment: Synthesis and Properties , Troy E. Wiegand

PURIFICATION OF LYSINE DECARBOXYLASE: A MODEL SYSTEM FOR PLP ENZYME INHIBITOR DEVELOPMENT AND STUDY , Leah C. Zohner

Characterization of Glycation Sites on Human Serum Albumin using Mass Spectrometry , Omar S. Barnaby

HIGH TEMPERATURE RARE EARTH COMPOUNDS: SYNTHESIS, CHARACTERIZATION AND APPLICATIONS IN DEVICE FABRICATION , Joseph R. Brewer

Classification, Synthesis and Characterization of Pyridyl Porphyrin Frameworks , Lucas D. DeVries

Ultrasonic Activation of Triacetone Triperoxide , LaTravia R. Dobson

Characteristics and Stability of Oxide Films on Plutonium Surfaces , Harry Guillermo García Flores

Controlling Reductive Elimination From Novel I(III) Salts Using a SECURE Method , Joseph W. Graskemper

I. A NEW SYNTHETIC APPROACH TO THE SYNTHESIS OF N-(PHOSPHONOACETYL)-L-ORNITHINE, II. THE INFLUENCE OF PYRIDINE ON THE OZONOLYSIS OF ALKENES , Bradley M. Johnson

Chromatographic Studies of Drug-Protein Binding in Diabetes , Kathryn (Krina) S. Joseph

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Thesis Preparation

The following information is provided to assist Chemistry graduate students as they prepare their theses. If graduate students have any questions that are not answered by this guide, they should email the Chemistry Education Office (questions about department policies) or MIT Libraries (for questions about thesis formatting, etc.)

Degree candidates must fill out the Degree Application via WebSIS at the start of the term. Important dates and deadlines (including late fees) for the upcoming academic year are listed below.  It is strongly advised that degree candidates apply for the degree list even if there is uncertainty about completing the thesis defense and submission by the  deadline, as there are no penalties for being removed from the degree list.

Students must successfully complete the thesis defense before submitting their final, signed thesis.

**Please note that the Specifications for Thesis Preparation were updated in November 2022. Please make sure you use these new guidelines.**

Important Dates & Deadlines

May 2024 degree list.

• Degree Application Deadline: February 9, 2024 ($50 late fee if submitted after this date, $85 late fee if submitted after April 12, 2024)
• Thesis Title Deadline: April 12, 2024 ($85 late fee if submitted after this date. If your thesis title is not finalized by this date, please enter your current working title and the final title can be updated later)
• Thesis Submission Deadline: May 10, 2024
• Last day of work in the lab: on or before May 29, 2024. If you plan to end your RA appointment earlier than May 29, 2024, please contact Jennifer to review your timeline.
• Your degree will officially be conferred by MIT on May 30, 2024
• Information about the MIT Health Plan and graduation will be available online here.

September 2024 Degree List

• Degree Application Deadline: June 14, 2024 ($50 late fee if submitted after this date, $85 late fee if submitted after July 21, 2024)
• Thesis Title Deadline:July 19, 2024 ($85 late fee if submitted after this date. If your thesis title is not finalized by this date, please enter your current working title and the final title can be updated later)
• Thesis Submission Deadline: August 16, 2024
• Last day of work in the lab: on or before August 31, 2024. If you plan to end your RA appointment earlier than August 31st, please contact Jennifer to review your timeline.
• Your degree will officially be conferred by MIT on September 18, 2024

February 2025 Degree List

• Degree Application Deadline: September 6, 2024 ($50 late fee if submitted after this date, $85 late fee if submitted after December 13, 2024)
• Thesis Title Deadline: December 13, 2024 ($85 late fee if submitted after this date. If your thesis title is not finalized by this date, please enter your current working title and the final title can be updated later)
• Thesis Submission Deadline: January 17, 2025
• Last day of work in the lab: on or before January 15, 2025. If you plan to end your RA appointment earlier than January 15th, please contact Jennifer to review your timeline.
• Your degree will officially be conferred by MIT on February 19, 2025

May 2025 Degree List

• Degree Application Deadline:February 7, 2025 ($50 late fee if submitted after this date, $85 late fee if submitted after April 11, 2025)
• Thesis Title Deadline: April 11, 2025 ($85 late fee if submitted after this date. If your thesis title is not finalized by this date, please enter your current working title and the final title can be updated later)
• Thesis Submission Deadline: May 9, 2025
• Last day of work in the lab: on or before May 28, 2025. If you plan to end your RA appointment earlier than May 28th, please contact Jennifer to review your timeline.
• Your degree will officially be conferred by MIT on May 29, 2025

Scheduling your Thesis Defense

All PhD candidates must have a Thesis Defense. As soon as your defense is finalized, please email the Chemistry Education Office with the date, time, location, and thesis title . Thesis defenses are strongly encouraged to be in-person.  If there are questions or concerns about an in-person defense, please reach out to Jennifer Weisman. When thesis defenses are on campus, we recommend reserving a room once the defense date is finalized, student can reserve department rooms through the online scheduling system or request a classroom via this form .

Degree candidates should provide their advisor with a copy of the thesis at least two weeks before the defense and provide their thesis committee chair and member with a copy at least one week before the defense. However, degree candidates should talk with their advisor, committee chair, and committee member to find out if they need the thesis further in advance or if there are preferred formats. Degree candidates should allow time in between their thesis defense and the submission deadline to make edits and submit the final copies.

Please note that most receiving a PhD degree are required to present a seminar as part of the thesis defense. This seminar is open to the department. The degree candidate is responsible for providing the Chemistry Education Office with information about their thesis defense at least two weeks ahead of time. Following the seminar, the candidate will meet privately with the thesis committee.

Thesis Formatting

The Institute has very specific requirements for thesis preparation, which were updated in November 2022. Specifications for Thesis Preparation is available on the library’s website and should be read very carefully. The MIT Thesis FAQ may answer additional questions and a helpful checklist is also provided. The specifications also include information about copyright and use of previously published material in a thesis . Do  not  rely on any templates or prior theses from your research group – they may not reflect the most current guidelines. We have highlighted some especially important points below.

Font & Spacing

Title page & committee signature page.

• The title page of the first copy will be digitally signed by the author, advisor, and Professor Adam Willard. The title page should contain the title, name of the author, previous degrees, the degree(s) to be awarded at MIT, the date the degree(s) will be conferred (May, September, or February only), copyright notice, and appropriate names and signatures. Degrees are awarded in Chemistry, regardless of your specific research area. Regardless of when you defend or submit your thesis, the date of degree conferral must be May/June, September, or February.
• As noted above, the title page will be signed by you, your advisor, and Professor Willard. You do not need to have Professor Willard digitally sign the thesis before you submit it, we will arrange to have him sign it. If your advisor has a title (ex., Firmenich Professor of Chemistry) it should also be included under their name. If you are not sure if they have a title, you can consult the Faculty Directory . Professor Willard should have the following listed under his name, on two separate lines: Professor of Chemistry; Graduate Officer
• Each student should place the appropriate copyright notice on the thesis title page. Copyright notice consists of four elements: the symbol “c” with a circle around it © and/or the word “copyright”; the year of publication (the year in which the degree is to be awarded); the name of the copyright owner; the words “All rights reserved” or your chosen Creative Commons license. All theses should have the following legend statement exactly: The author hereby grants to MIT a nonexclusive, worldwide, irrevocable, royalty-free license to exercise any and all rights under copyright, including to reproduce, preserve, distribute and publicly display copies of the thesis, or release the thesis under an open-access license. Please carefully review the copyright information to determine the appropriate copyright ownership.
• The date under Signature of Author should be the date the final thesis is signed and submitted to the department.
• The title page is always considered to be page 1, and every page must be included in the count regardless of whether a number would be physically printed on a page. We recommend that you do not include the page number on the title page.
• There is also a signature page that will be digitally signed by your entire thesis committee. Your advisor will digitally sign your thesis twice, on the title page and signature page. The signature page is right after the title page.
• More details about digital signatures are provided below.

Table of Contents

Final thesis submission, general submission process.

Please carefully review the details below, including the file naming format . There are two steps to the final submissions process:

1. Submit the following documents to the Department of Chemistry:

• An electronic copy of your thesis in PDF/A-1 format (with no signatures)
• A PDF of the digitally signed title page and committee signature page (using DocuSign to obtain signatures)

Please send an email to your advisor, Jennifer Weisman, and William McCoy, which includes the 2 PDFs above and the following text:

“Dear Professor/Dr X: Attached is the final version of my thesis. Please use reply-all to this message to indicate your acceptance of my thesis document and your recommendation for certification by my department.”

**Note: if your thesis document is too large to send via email, your email can include a link to access the document via Dropbox, Google Drive, etc.**

2. Submit your thesis information to MIT Libraries here . Choose to opt-in or opt-out of ProQuest license and publication.  Include the same copyright and license information that is on your thesis title page. Note: this does not involve submitting your actual thesis.

Details for Thesis Submission Process

• After the defense, the student and thesis committee reach agreement on the final thesis document.
• Students should follow the format specifications as stated in the Specifications for Thesis Preparation . Do not print or physically sign pages.
• Students will have the thesis signed electronically through DocuSign. This process is described in detail in the section below.
• The title page is always considered to be page 1, and every page must be included in the count regardless of whether a number is physically printed on a page. The entire thesis (including title page, prefatory material, illustrations, and all text and appendices) must be paginated in one consecutive numbering sequence. Your committee signature page should be page 2. Please see the  Sample Title Page and committee signature page for reference.
• You will still include the title page and committee signature page in the full thesis PDF, they just won’t have any signatures.
• The digitally signed title page and committee signature pages should be in one PDF, separate from the thesis document. This avoids a DocuSign tag at the top of each page of the full thesis. Please use the following naming convention: authorLastName-kerb-degree-dept-year-sig.pdf (ex., montgomery-mssimon-phd-chemistry-2021-sig.pdf).
• Students should save their final thesis document as a PDF using the following file naming convention: authorLastName-kerb-degree-dept-year-thesis .pdf (ex., montgomery-mssimon-phd-chemistry-2021-thesis.pdf).
• Students should not deposit the PDF of their thesis via the Libraries Library’s voluntary submission portal.
• Please send an email to your advisor, Jennifer, and William which includes the final thesis document and file with the digitally signed title/committee signature pages with the following text:

Please also complete the MIT Doctoral Student Exit Survey and your Laboratory Safety Clearance Form .

Digital Signatures

Please see here for a full guide (with screenshots) to using DocuSign to obtain digital signatures

Required Signatures:

These should be everyone’s uploaded digital signatures in their own handwriting, not one of the pre-formatted signatures created by DocuSign.

• Your signature on the thesis title page
• Your advisor’s signature on both the title page and committee signature page
• Your thesis committee chair’s and member’s signatures on the committee signature page
• You do not need to have Adam Willard sign your title page, the Chemistry Education Office will take care of that
• Full thesis with no signatures (including unsigned title page and thesis committee signature page)
• Title page and committee signature page with signatures via DocuSign

Accessing DocuSign

Thesis Hold Requests

Details about requesting a thesis hold are available here and the requests are made to different offices based on the type of request.

Written notification of patent holds and other restrictions must reach the Institute Archives before the thesis in question is received, as under normal circumstances, all theses are open and available for public inspection once they have been received by the Institute Archives.

Graduate Student Exit Interviews

In order to best serve the educational, scientific, and social needs of graduate students in the Chemistry Department, it is critically important that Departmental leadership be appropriately informed of issues of importance to graduate students, ideally on an ongoing basis. Graduate student exit interviews provide information that alert the Department to acute issues that affect graduate students and provide data for longitudinal assessments of graduate student experience within the program.Graduate exit interviews are administered to all graduate students departing the Chemistry Department. The exit interview applies equally to graduate students departing with completed degrees (Ph.D. and M.S.) and without degrees.

• Graduating students will be sent a list of interview questions by the Chemistry Education Office when the student joins the degree list. Instructions about scheduling a time for the in-person or virtual discussion will be included with other informational correspondence from the Chemistry Education Office regarding degree completion. Graduating students will perform their exit interview after the thesis defense so as to avoid making the interview an additional burden.
• For students departing the program without a degree, the interview questions and instructions for scheduling an in-person discussion will be sent by the Chemistry Education Office at the point in time that a date for termination of their appointment in Chemistry is determined.
• For the majority of departing students, this interview coincides with the end of the semester, but a rolling schedule of surveys is anticipated.

Postdoctoral/Research Specialist Appointments

If you plan to transition to a postdoctoral/research specialist appointment within the Department of Chemistry at MIT, please contact Jennifer Weisman and  Chemistry HR as soon as possible. Your final signed thesis must be submitted before a postdoc appointment can start. If you are an international student, it is extremely important that you start this process early to allow sufficient timing for visa processing. In addition to talking with Jennifer and HR, please consult with the International Students Office .

Home > Chemistry > Chem TDs > Masters Theses

Chemistry Masters Theses

Theses from 2020 2020.

NANODIAMONDS AND CARBON NANO-ONIONS CERAMIC COMPOSITES AND THEIR APPLICATIONS , Ibrahim Munkaila Abdullahi

Theses from 2017 2017

In situ pH determination based on the NMR analysis of ¹H-NMR signal intensities and ¹⁹F-NMR chemical shifts , Ming Huang

Theses from 2016 2016

Tracking silver, gold, and titanium dioxide nanoparticles through drinking water systems by single particle - inductively coupled plasma - mass spectrometry , Ariel Renee Donovan

Theses from 2015 2015

In vitro study of wound-healing capabilities of bioactive glass fibers under various culture conditions , Sisi Chen

CapPack devices for enhanced qNMR measurements in 1 H NMR spectroscopy , Lingyu Chi

Theses from 2013 2013

Part I: Increased leaching of arsenic, selenium, molybdenum, and vanadium from high calcium coal ash containing trona reaction products. Part II: Using agricultural byproduct rice hull as biosorbent to remove and recover metal ions in water , Yongbo Dan

Role of nicotine in oxidative stress , Rakesh Kacham

Comparative evaluation of N-acetylcysteine and N-acetylcysteine amide in acetaminophen-induced oxidative stress , Ahdab Naeem Khayyat

Theses from 2011 2011

Relaxation imaging to characterize lightweight polymer-crosslinked aerogels , Emmalou T. Satterfield

Theses from 2010 2010

Water analysis for emerging environmental contaminants , Xiaoliang Cheng

Comparing the chelating abilities of N-acetylcysteine and N-acetylcysteine amide in vitro for lead poisoning treatment , Weiqing Chen

Theses from 2008 2008

Obscurant oil characterization produced through vaporization by exhaust gas of mini-jet turbine engine , Hossein Daniel Bahaghighat

Polymer reinforced aerogels and composites A. Polyimide crosslinked aerogels B. Silica-polymethylmethacrylate composites , Vishal U. Patil

A rapid method for determination of alpha hydroxy acids in seawater and biological fluids at trace levels , Ryan Lee Schwiderski

N-Acetylcystein amide protects against methamphetamine-induced oxidative stress in human brain endothelial cells , Xinsheng Zhang

Theses from 2007 2007

Physical analysis of human hair , Lea Marie Dankers

Theses from 2006 2006

X-ray photoelectron, Raman and attenuated total reflection-infrared spectroscopy studies of sonochemically oxidized multiwalled carbon nanotubes , Robert V. Hull

Part I, Synthesis and characterization of biogenic oil esters ; Part II, Assessment of relative antioxidant activities of selected antioxidants in different matrices , Ranjith Kolli

New Schiff base complexes: Synthesis and their properties : [N,N'-bis (3-methoxysalicylidene)-o-phenylenediamine] Nickel (II), [N,N'-bis-salicylidene-3,4-diaminotoluene] Nickel (II) and helical-chain copper (II) complex from 4(5) -imidazolecarboxaldehyde and ß-alanine , Feng Liu

Effect of plasticizer on segmental dynamics of bulk and adsorbed poly(vinyl acetate)-d₃ , Rakesh R. Nambiar

Effects of a newly synthesized thiol antioxidant on doxorubicin-induced oxidative stress , Rong Shi

Enzymatic synthesis and characterization of acidic amino acid oligomers , Hao Wang

Synthesis and characterization of some Schiff base metal complexes , Lili Wang

Functionalization of mesoporous silicas as powders for support and immobilization of Pd catalysts and as monolithic framework for building strong lightweight materials , Xiaojiang Wang

Theses from 2005 2005

Particulate matter (PM) emissions analysis for commercial aircraft operating in the landing and takeoff (LTO) cycle , Niharika Burla

Bound carbonyls in adsorbed PMMA-r-PS copolymers , Pavan K. Challa

Enzymatic synthesis and LC, MS and MS-MS characterization of tailored peptides , Hareesh Kumar Reddy Palli

Oxidation of trichloroethylene by microsomal cytochrome P450 enzymes , Arun Sahu

Effect of chiral solution precursors in the epitaxial electrodeposition of metal oxides , Jonathan Edward Stewart

Theses from 2004 2004

Binuclear phthalocyanine core controversy: aromatic vs. diene core , Srinivas Achanta

Application of soybean oil methyl ester for remediation of PCBs contaminated soil , Lijun Fan

Analysis of transient particulate emissions in jet engine exhausts , Sesha Krishna Kattamuri

Effect of food processing techniques on phytosterol, tocopherol and volatile content in soybean and soybean derived foods , Naga Mallika Surapaneni

Theses from 2003 2003

Polymer-metal interactions , Ayse Beyaz

Glycoprotein characterization by HPLC-ESI-MS and anticancer drug screening and mechanism study , Junnan Chen

Part 1, Synthesis and spectroscopic characterization of Ru(3,8-dibromo-1,10-phenanthroline)₃(PF₆)₂ ; Part 2, Magnetic field and temperature effects on the emission properties of d- and 1- tris(2,2'-bipyridyl)ruthenium(II) complexes , Penggao Duan

A study of in vitro and in vivo toxicity of 3-nitro-L-tyrosine , Wei Hu

Capillary electrophoresis and its applications in the biological sciences: coenzyme A, polyamines and catecholamines , Guanshu Liu

Assessment of biodegradability and mutagenicity of methyl soyate and mineral oils , Shilpa (Shilpa Suresh Mathkar

In general, the voltammeteric current from a mixture of redox-active substances will not be the sum of the currents that each substance would produce at the same concentration independently , Woon Su Oh

Theses from 2002 2002

Selective recovery of triglycerides, phytosterols, tocopherols and isoflavones from soybean , Sabrina Forni

Glass transition behavior of thin poly(methyl methacrylate) films on silica , Moses T. Kabomo

The aerosol and chemical characteristics of rocket exhaust in the stratosphere , Andrew P. Rutter

Theses from 2001 2001

Characterization of scrap tires and printed circuit boards pyrolysis products , Shuping Ai

The effects of variable molecular weight and solvents, in water-reducible acrylic resins , John Adrion Jones

Catalytic effect of copper ions on homocysteine auto-oxidation to induce oxidative stress , Douglas Robert Krutil

Synthesis of transition metal substituted large crystal zeolite ZSM-5 , Tara Lyn Schaeffer

Applications of supercritical fluid extraction and chromatography for determination of cholesterol oxides in biological matrices , Uma Maheswar Rao Srirangam

Theses from 2000 2000

Synthesis of crosslinkable water reducible acrylic copolymers for coatings , Mandar R. Bhave

Synthesis and spectroscopic characterization of 2,7-diazapyrenium compounds , Zhan Mao

Evaluation of (the intrinsic conducting polymer) polyaniline as a corrosion inhibitor on (aircraft grade) aluminum alloys , Matthew Shannon Pittman

Theses from 1999 1999

The role of additives and diluents in copper deposition from organic solutions , David Samuel Gillis

Jet engine particulate emissions as a function of fuel formulation (additives) , Melissa R. Wilson

Plausible antioxidant functions of N-acetylcysteine and D-penicillamine in the treatment of copper toxicity , Mozow Yusof

Theses from 1998 1998

Characterization of petroleum fog oil and vegetable oil smokes , Andrew Oliver LaRouche

A study on degradation of polychlorinated biphenyls (PCBs) in contaminated matrices with gamma radiation , Qunhui Liu

Evaluation of the coordination chemistry of 2-(2'-pyridyl)imidazole with selected palladium (II) compounds , Theresa Marie Pierce

Alumoxane-based corrosion resistant coatings for aluminum substrates , Yue Wu

Determination of biological thiols by HPLC following derivatization by ThioGlo[trademark symbol] maleimide reagents , Bing Yang

Theses from 1996 1996

Evaluation of macrocyclic antibiotics as chiral selectors for high performance liquid chromatography , Christina Sue Bagwill

Assessment of entrapped freon in polyurethane foams and its release into the atmosphere , Susrut Kesari

Segmental motion of surface-bound swollen poly(methyl acrylate)-d , Minghua Liang

The effects of 4-Hydroxynonenal and N-Acetyl-L-cysteine on c-Myc induced apoptosis , Deniz Yildiz

Theses from 1995 1995

Synthesis and characterization of water reducible MMA-MMA copolymers , Hua-Jung Hu

The in vitro study of metabolic effects of D- and L- forms of amino acids on tumor cell growth , Xiang Luo

Theses from 1993 1993

Thermal stability of chymotrypsin using UV-VIS and Raman spectroscopy , Ashik Chandra

Thermodynamic investigation of the sphere-rod transition in the presence of organic electrolytes , Yvonne Liske

Organic titanates as coupling agents for Kevlar/phenolic composites , Nalini Menon

Optical emission spectroscopy study of interaction of a metal chelate with RF plasma , Wu-Sheng Shih

Synthetic approaches for intermediates of 1,8-naphthalene phthalocyanines , Alexander Albert Williams

Theses from 1992 1992

The preparation of silicon-containing monomers : dimethylbis(aminophenyl)silane and 1,3-tetramethylbis(p-aminophenyl)disiloxane , Louis Chi-Kuo Hsieh

Effect of in vivo lead exposure on lymphocyte response to in vitro mitogenic stimulation , Chaandini Jayachandran

Removal of organic compounds from water via derivatized cyclodextrins , Deanna Lynn Schmid

Cyclodextrin stationary phases for the chromatographic separation of gases , William Taylor Wall

Theses from 1991 1991

Templating of plastics for coatings , Ree-Hsueh Wang

Theses from 1990 1990

Molecular mobility in a model polymer composite , Joan Ethel Gambogi

Selenium and tellurium in cigarette tobacco, smoke and ash , Se-Il Kim

Interaction of 1,2-dimethoxyethane and 1,2-dimethoxyethane/water mixtures with poly(2-hydroxyethyl methacrylate) based hydrogels , Wei Liu

Synthesis of linear aliphatic polysulfides and their corrosion inhibiting effects , Emerentiana Sianawati

The relative rates of tertiary amine oxidations with hydrogen peroxide as measured by proton nuclear magnetic resonance spectroscopy , Patrick L. Weaver

Correlation of corrosion resistance of protective coatings with adhesion, moisture permeability, and oxygen permeability , Wen-Jung Yu

Theses from 1989 1989

The determination of selenium and tellurium in lead alloys by graphite furnace and hydride generation atomic absorption spectrometry , Gregory James. Fox

Theses from 1988 1988

High performance liquid chromatography as an analytical method for determining the relative reactivity of the hydroxyl groups of methyl-4,6-0-benzylidene-alpha-D-glucoside and methyl-alpha-D-glucoside , R. Kevin Anderson

Adhesion of polyurethane coatings to an aluminum substrate and glass fiber reinforced polyurethane composites with contact clarity , Michael James Carr

Ultrasonic dispersion of pigment in solvent based paints , James O. Stoffer

Thermal, mechanical and interfacial characterization of a fiberglass reinforced plastic composite , Theodore J. Williams

Adhesion and corrosion testing as a means of coatings evaluation , Jie Xu

Theses from 1987 1987

Temperature dependent ternary solution behavior of aqueous nonionic surfactant systems containing aliphatic ketones , Gregg Alan Barnes

Development of tests for measurement of adhesion of coatings , Surendra Kanhaiyalal Gadodia

The synthesis and characterization of polycarbonates based on 1,1'-dihydroxyethyl-2,2'-biimidazole , Judith J. Garces

Study of glass matrixing of marine antifouling agents for surface coating application , Angela M. Ross

Non-aqueous carboxylic-carboxylate microemulsion , Diep Thi Vo

Theses from 1986 1986

Syntheses and characterization of macromolecules by reaction of diglycidyl ether of bisphenol A and dihydroxyethyl biimidazole , Weichen Chi

Ultrasonic despersion of pigment in water based paints , Maher Fahim

The acylation of primary and secondary amines by the N-hydroxysuccinmide esters of unsubstituted and substituted styrlacetic acids , Lawrence D. Rutledge

Theses from 1985 1985

Nucleation of zinc by electrodeposition onto glassy carbon from acidic zinc sulfate solutions , Beverly J. Flori

The structure of oligomers released by enzymatic hydrolysis of the alkali-insoluble cell wall polysaccharide of Schizophyllum commune , Abbas K. Samadi

Structural determination of an extracellular polysaccharide from Phanerochaete Chrysosporium , Anthony Allan Stevens

Theses from 1984 1984

The preparation and evaluation of alkyd resins that comply with solvent restrictive regulations , Karen Kohl Beckmann

The effect of cobalt driers on the drying and the post-cure embrittlement of Pale Bodied Varnish Linseed Oil in Mineral Spirits and 1,1,1-Trichloroethane , Esin Gunay

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The School of Chemistry at the University of Edinburgh is the top rated for teaching and research in Scotland.

Presented here is a selection of research from the School

This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All persons copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder.

Recent Submissions

It’s not all about u: the role of volume and entropy in weakly bound crystal structures , creation of an artificial stetterase through the design, synthesis and installation of an organocatalyst into a protein scaffold , mixed-valence titanium oxide materials as photocatalyst and electrocatalyst , exploring cooperativity in multimetallic main group catalysts for polyester synthesis via ring opening (co)polymerisation , probing the organisation and turnover of synaptic proteins at the nanometre length scale , molecular dynamics simulations of engine lubricant additives , utilising non-canonical amino acids in the design of artificial enzymes: an exploration of cu-enzymes, steroid carrier protein scaffolds and synthetic biology , magnetism of multinuclear 3-d transition metal complexes of 2-hydroxymethylpyridine , antimicrobial polymers , biological control of crystallization by marine phytoplankton to produce functional mineral structures , low-temperature phase-change materials for energy-storage applications , biocompatible aldehyde modification in escherichia coli , novel smart probes for detection of neutrophil activation and net formation and investigation of etosis in fish erythrocytes , improving rapid pathogen detection: towards a gram-selective lateral flow test , towards predicting and tailoring properties of energetic materials , development of liquid crystal lasers for application in fluorescence microscopy , block by block: developments in nmr methodology , development and understanding of iron-catalysed c–h functionalisation reactions , developing new processes for the solvent extraction of precious metals , effect of drainage and drain-blocking on the molecular and microbial composition of blanket bog peat .

We are always happy to welcome motivated students who would like to join our team for their bachelor or master thesis.

We are developing new metal-free catalysts to contribute to the areas of sustainable synthesis and hydrogen storage, both of which play a crucial role in realizing a sustainable society. An important aspect of our research involves quantum mechanical calculations, which guide and complement our synthetic and experimental work. Anyone interested in conducting synthetic organic reactions and/or investigating the mechanism of complex catalytic reactions through a combination of spectroscopic methods and computational chemistry is welcome to inquire with Urs Gellrich about a potential project.

Applications from Erasmus students are encouraged!

Postdocs and PhD candidates: Please get in touch with a list of possible funding sources and contact details of two referees.

Wir freuen uns immer über motivierte Studierende,  die sich unserem Team für eine Bachelor- oder Masterarbeit anschließen möchten. 

Wir entwickeln neue metallfreie Katalysatoren, um einen Beitrag zu den Bereichen nachhaltige Synthese und Wasserstoffspeicherung zu leisten, die beide eine entscheidende Rolle bei der Verwirklichung einer nachhaltigen Gesellschaft spielen. Ein wichtiger Aspekt unserer Forschung sind quantenmechanische Berechnungen, die unsere synthetischen und experimentellen Arbeiten leiten und ergänzen. Wer daran interessiert ist, synthetische organische Reaktionen durchzuführen und/oder den Mechanismus komplexer katalytischer Reaktionen durch eine Kombination von spektroskopischen Methoden und computergestützter Chemie zu untersuchen, darf sich gerne bei Urs Gellrich nach einem möglichen Projekt erkundigen. 

Bewerbungen von Erasmus-Studierenden sind ebenfalls willkommen!

Postdocs und Doktoranden: Bitte mit einer Liste möglicher Finanzierungsquellen und den Kontaktdaten von zwei Referenzpersonen per E-Mail melden.

Dr. Us Gellrich Garbenstr. 30, building no. 02.32., 1nd basement floor, room no. 150 Phone: +49 711/459-22171  E-mail:  [email protected]   

Further Information

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• Stockholm University
• Department of Organic Chemistry
• PhD studies
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Diploma work

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Information regarding cheating during examination at SU

Bachelor program*, master program*, head of studies (bachelor/master), head of studies (phd), phd studies.

The Department of Organic Chemistry has an extensive research program. This research program covers many areas of experimental and theoretical chemistry including metal catalysis, asymmetric synthesis, several areas of bioorganic chemistry such as carbohydrate chemistry, nucleotide chemistry and enzyme chemistry.

Our PhD Program

• New PhD student
• Course accrediting
• Half-time report
• Contributions to publications in PhD thesis

PhD Courses

During the PhD education, a total of 60 ECTS of advanced courses must be completed. The director of PhD studies is responsible for updating the departmental website with a schedule of available courses at the department. The planning of courses for the each PhD student should be done in conjunction with the establishment of the ISP.

Schedule of PhD courses

Mandatory courses:

KO41001 Teaching Chemistry at the Department of Organic Chemistry (2 ECTS)

This postgraduate course is designed for PhD students in Chemistry with little or no experience of teaching, and is focused at teaching assignments as assistants leading labs, exercises, or supervising master projects.

KO41002 Philosophy of Science and Ethics at the Department of Organic Chemistry (3 ECTS)

This is an introductory course about the Philosophy of Science and about good research practice. The course contains lectures by invited speakers, group discussions and written assignments.

KO41003 Writing Science at the Department of Organic Chemistry (3 ECTS)

In this course, PhD students will develop their proficiency in writing scientific articles and reports in English. Topics include: i) Building an article outline; ii) Writing section-specific topics (experimental section, introduction, results and discussion, conclusions); iii) Principles of good writing; and iv) Writing style. The course covers lectures by invited speakers and written assignments.

KO41004 Communicating Science/Arrhenius Seminar at the Department of Organic Chemistry (1 ECTS)

The course is focused on oral presentations and poster presentations of chemistry research for PhD students. Discussions and presentations will be focused on the organization of oral presentations, and give general advice on how to convey a message.

KO40001 General Organic Chemistry (10 ECTS)

The aim of the course is to provide the students with a broad understanding of organic chemistry. The course provides the students with a general introduction and basic understanding of areas such as chemical bonding, computational chemistry, spectroscopy, X-ray structure analysis, catalysis, photoredox chemistry, organocatalysis, green & sustainable chemistry, chemical biology, computer aided literature search and computer aided synthesis planning.

KO40007 First Aid Course (1 ECTS)

The aim of the course is to provide an introduction to First Aids. The course is compulsory for all graduate students and recommended for all other researchers and personnel at the Department of Organic Chemistry.

Electable courses at the department:

KO40002 Advanced Organic Chemistry (15 ECTS)

This course in advanced organic chemistry emphasizes on the most important aspects of reactivity within the field of organic synthesis. The students will gain a deeper mechanistic understanding of organic reactions as well as a broader knowledge regarding organic reactivity.

KO40003 Physical Organic Chemistry (15 ECTS)

The aim of the course is to complement the education in organic synthesis and catalysis with an advanced perspective on the physical origin of chemical reactivity in organic molecules. The main emphasis is placed in the fundamental aspects of bonding, conformation, thermodynamics, kinetics that allow to explain and predict the behavior of chemical systems.

KO40004 Advanced Catalysis by Transition Metal Complexes (10 ECTS)

In this course, PhD students will develop their proficiency in organometallic catalysis towards organic synthesis. In addition to the lectures, the PhD students will develop their proficiency in reading and disseminating modern organometallic research articles, as well as in discussing and proposing reaction mechanisms in the exercise classes.

KO40005 Practical NMR Spectroscopy for Organic Chemists (7.5 ECTS)

After completion of the course, the PhD student should be able to perform NMR experiments and interpret NMR spectra from organic molecules.

KO40006 Theoretical Organic Chemistry (15 ECTS)

The course is aimed at experimental organic chemists intending to use quantum chemical modeling in their research. It involves both quantitative and qualitative aspects of quantum chemistry focused on organic and organometallic applications.

KO40008 Total Synthesis of Natural Products (7.5 ECTS)

The aim of the course is to provide an introduction to selected topics in modern synthetic organic chemistry. The main emphasis will be placed on state of the art methods for stereoselective synthesis and applications to the total synthesis of complex molecules, particularly biologically significant natural products.

KO40009 Modern Methods and Strategies in Synthetic Organic Chemistry (7.5 ECTS)

This course places emphasis on the methods and strategies of synthetic organic chemistry that have been developed, improved, and applied primarily since the year 2000. It is designed for participants who have previously studied organic reactions, mechanisms, and stereochemistry. The goal of the instructor is to build upon basic background material to familiarize the class participants with not only the methods that are commonly used in synthetic organic chemistry but also with the basic approaches for planning syntheses of complex organic compounds based upon the most recently developed methods.

KO40010 Frontiers in Organic Chemistry (7.5 ECTS)

The aim of the course is to complement the education in organic chemistry with exposure to an unrelated research topic to the main activity of the student, and the strengthening of soft skills to complement the technical training. The alternative research topic, which is central to the development of instruction in this course, is aimed at preparing the student for upcoming professional opportunities after the PhD graduation.

KO40011 Applied Medicinal Chemistry (2 ECTS)

Handbook Doctoral Studies

This handbook is intended for for both PhD students as well as their supervisors and contains useful information regarding most of the different aspects of the PhD education at the Department of Organic Chemistry.

PhD Handbook

Individual Study Plan

For each PhD student, an Individual Study Plan (ISP) should be established and handed in at the latest 1-2 months after start of the PhD studies. The ISP template and attachment 5 are found below. The ISP is updated once per year (normally in November); this is initiated by the director of PhD studies who is responsible for distributing the latest version of the form. The forms are filled out by the PhD student and the supervisor together, and are then countersigned by the student, supervisor and assistant supervisor. The ISP is approved by the Director of the PhD education.

ISP_210907.docx PhDGoals_attachment5.docx

Half-time Control

The progress of the PhD studies is evaluated at half-time, either in the form of a licentiate thesis or half-time summary consisting of a report and a seminar.

The department routines for licentiate theses are the same as for a half-time control, apart from that the licentiate thesis is also uploaded in DiVA for open access. The faculty rules for licentiate theses are found on the faculty website.

Three months before the planned seminar, the supervisor and student should fill in a half-time control form , including a suitable opponent, and hand it in for approval by the director of science or the director of PhD studies. If insufficient, written feedback is provided to the supervisor and student. When approved, the form is archived and the student can proceed with the preparation of the seminar and report.

The report consists of a 25-35 page summary of the conducted research and follows the format of a PhD thesis with the published articles and manuscripts attached as appendices.

Four weeks before the seminar, the report is handed in to an evaluation group consisting of the assistant supervisor and the director of science or the director of PhD studies who will assess the quality and give feedback to the student. At this stage it will also be checked for plagiarism. In case the quality is judged insufficient, the seminar will be postponed until the revised report is approved.

Three weeks before the seminar, the report is archived and distributed to the evaluation group and the opponent. The opponent should hold a PhD degree and have no conflicts of interest to the research group.

The half-time seminar is open to the public, and the student first presents his/her work during 30 minutes. After this, the opponent leads a discussion with the student and asks critical questions for approximately 30 minutes. Apart from a scientific discussion, the opposition includes formative feedback on the written report as well as the oral presentation.

After completion, the opponent and the examiner sign a form that is archived at the department. An oral feedback of the presentation is also given to the student by the supervisor and examiner (either the director of science or the director of PhD studies) in connection to the seminar.

Half-time form

PhD Thesis Defense

• Guidelines regarding the design of doctoral dissertations Doktorsavhandlingen - regler och rekommendationer
• Regulations for Public Defense Regler för utbildning och examination på forskarnivå Disputationsregler Naturvetenskapliga området Disputationsregler Naturvetenskapliga området
• Disputationsblankett
• Recommendations during the ongoing outbreak of the Coronavirus English Swedish

General Study Plan (ASP)

General Study Plan 2020-11-16

ASP_2020-11-16_Swedish.pdf ASP_2020-11-16_English.pdf

General Study Plan 2017-06-12

ASP_2017-06-12_Swedish.pdf ASP_2017-06-12_English.pdf

Scientific Department Meetings

The department organizes 10 Scientific Department Meetings (SDM) per year. The meetings take place once per month in the Magnéli hall and are open for the entire department. Attendance is mandatory for the PhD students. Each meeting starts with general information concerning the PhD program as well as relevant information regarding safety, seminars, defenses, administration, courses, introduction of new coworkers etc. This is followed by 3-4 short presentations (15 minutes) given by the PhD students, focusing on their current research project. Each presentation is followed by an open question session in which the auditorium (40-50 persons) can discuss and comment the project. The presentations are normally prepared and rehearsed within the corresponding research group of the student and formative feedback is provided by the supervisors after the SDM presentation.

SDM_2021-2022_FINAL.pdf

This Schedule may be slightly modified. The updated Schedule is sent regularly by email by Abraham Mendoza.

PhD council

Phd council meeting notes.

Riktlinjer för disciplinärenden vid Stockholms universitet

Regler för salstentamen

The Department of Organic Chemistry at Stockholm University offers education in organic chemistry at Bachelor, Master, and PhD level. Courses are taught at KÖL and at the department, in well-equipped laboratories where students will master fundamental techniques including: Grignard reactions, substitution reactions, elimination reactions, condensations, enolate chemistry, distillation, chromatography, and basic NMR spectroscopy at the Bachelor level and at the Master level advanced techniques including: Schlenk-techniques, organometallic reagents, chiral separation using both HPLC and GC, high resolution mass-spectroscopy, advanced 1D 2D NMR-techniques, and computational chemistry.

The Department of Organic Chemistry has professional teachers from the whole world and courses are taught in English from the bachelor level. We are pioneers in problem-based education and well known for giving both a deep and broad education in the theoretical as well as the practical parts of organic chemistry. Students will spend about half their time in the laboratories during courses.

For further information about our programs please click on Bachelor , Masters , PhD

For more general information please visit KÖL www.kemi.su.se or contact Head of Studies

• To the University website

Search the website

Original Research Proposal – Organic

General layout for 4th year orp.

Overview . The goal of the ORP is to have students come up with an independent research proposal. Your ORP should focus on a big picture problem in chemistry. You should pull from multiple areas outside of your area of expertise (synthesis, catalysis, electrochemistry, photochemistry, chemical biology, polymer/materials) to address a contemporary and unsolved problem . Each specific aim should be independent on each other (this will be one of the metrics we will use to assess the ORP). The scope of the project should be that of a postdoctoral fellowship – something that can be accomplished in 2-3 years by one postdoc.

Specific Aims PreORP . You must first submit a one-page, single spaced description of the Specific Aims of your proposal (see formatting requirements below). Consider it an executive summary of your planned proposal. It should include significance (how it fits into the broader field and how it advances the field), innovation, and summary of research plan broken up into 2-3 specific aims. The aims should all focus on solving the problem you laid out, but should be independent of each other (e.g. if Aim 1 fails, Aim 2 is still feasible). This must be approved before writing the full proposal.

An excellent guide for writing specific aims can be found here .

ORP. Once your Specific Aims are approved, you must submit a max 12 page double spaced proposal (see formatting requirements below). It should contain the following sections: Significance, Innovation, and Research Plan. The research plan should be broken up into each of your specific aims, and should describe how you will accomplish them. At the end of each specific aim, you should describe potential problems and how you will address them. Include a concluding paragraph indicating what will be accomplished if the proposal is successful.

Formatting requirements : Times New Roman, Arial, or Helvetica. Font size 11 pt. Margins 1 in. Font color: black. Total length of document: Maximum 1 page single spaced for Specific Aims PreORP; 15 pages max double spaced for ORP. Alignment – Justify (i.e. straight edges like in journal articles). Figures should help to communicate the ideas in the proposal. Use ACS 1996 Template in Chemdraw.

Saving Files

For the ORP document: Last Name_ORP Year For the ORP Prep Proposal: Last Name_PreORP Year For the ORP Resubmission: Last Name_ORP Year_Resubmit#

Example: WilkersonHill_ORP2020 for the first draft  and WilkersonHill_ORP2020_Resubmit2 for the resubmit

4th year ORP Grading Rubric

Each proposal is reviewed by two faculty members who are not the student’s advisor. Anonymized feedback is returned to students within two months of submission. Proposals are graded Pass or Fail. A failed proposal may be revised and resubmitted up to one month after student notification.

Student name:

Proposal title:

Overall Impact

Reviewers will provide an overall impact score to reflect their assessment of the likelihood for the project to exert a sustained, powerful influence on the research field(s) involved, in consideration of the following three scored review criteria.

Scored Review Criteria

Reviewers will consider each of the three review criteria below in the determination of scientific and technical merit, and give a separate score for each.

Final Ranking

DSpace JSPUI

Dspace preserves and enables easy and open access to all types of digital content including text, images, moving images, mpegs and data sets.

• Shodhbhagirathi @ IITR

DOCTORAL THESES (chemistry) Collection home page

• 2 Hussen, Abdulkadir Shube
• 2 Kumar, Neeraj
• 2 Kumar, Rajeev
• 2 Prakash, Om
• 2 Sharma, Rashmi
• 2 Singh, Pallavi
• 2 Singh, Rashmi
• 1 AbdulKadir, H. K.
• 1 Abdullah, Adil Ali
• 348 CHEMISTRY
• 21 HETEROCYCLIC COMPOUNDS
• 13 PHYSICO-CHEMICAL
• 11 PHYSICO-CHEMICAL STUDIES
• 10 AMINO ACIDS
• 6 BIOLOGICALLY IMPORTANT COMPOUNDS
• 6 INFLAMMATORY DISEASES
• 6 PEROXYDISULPHATE ION
• 5 BIOLOGICAL IMPORTANCE
• 129 2010 - 2020
• 94 2000 - 2009
• 69 1990 - 1999
• 84 1980 - 1989
• 64 1970 - 1979
• 33 1964 - 1969
• 72 Malik, Wahid U.
• 37 Goyal, R. N.
• 35 Jain, A. K.
• 32 Gupta, V. K.
• 27 Bhushan, Ravi
• 23 Srivastava, S. K.
• 18 Mahesh, V. K.
• 18 Singh, A. K.
• 17 Sharma, C. L.
• 16 Tandon, S. N.

Home / Reaction Maps Now Available

By James Ashenhurst

Reaction Maps Now Available

Last updated: September 23rd, 2022 |

New study guide for Master Organic Chemistry released today. Reaction Maps !

• 15 page PDF with 27 individual “Reaction Maps” based on key functional groups from Org 1 / Org 2
• Covers alkanes, alkenes, alkynes, alkyl halides, alcohols, ethers, epoxides, Grignard reagents, organometallics, aromatic compounds, aldehydes, ketones, carboxylic acids, esters, acid halides, anhydrides, enols, enolates, nitriles, amines, dienes and rearrangements.
• A 60-page non-shrunk version is available upon request if you purchase (some testers found the 15-page version too small).
• Page 1 (Index and Alkanes) sample page HERE (PDF).
• Perfect if you’re working on synthesis or just trying to put all the reactions you learn into perspective.
• Might be overwhelming if you’re just getting started with organic chemistry. But probably very useful once you’re deep into Org 2.
• What is it missing? Carbohydrates, just because they’re difficult to put in a “map” type format.
• $15 currently.
• Link to purchase here

What’s “Reaction Maps?”

You’re probably familiar with the basic idea: start with a functional group, and draw a little “web” of all the reactions that branch out from it, like this:

The Reaction Maps PDF has 27 of these maps. Since the reactions in the map are a little big generic, there are specific examples for the reactions in each map in the section below.

Reaction Maps is a 15 page full color PDF.

It’s actually 60 pages shrunk 50% to make it manageable for printing and studying.

Some people get eye strain with the compressed version, so it’s been designed in a 4-quadrant format allowing it to be expanded 200% without any pages cutting off.

(A 60-page non-compressed version is also available upon request ([email protected]) when you purchase Reaction Maps. )

The Reaction Map PDF also contains active links to mechanisms for each reaction (although you’ll need an MOC Membership to access the Reaction Guide pages).

Sample Page (PDF) 

Hope you find it useful. Thanks to everyone to provided feedback for the draft version, and to Patryk Wiśniewski for both suggesting and collaborating on this project.

Purchase Reaction Maps here (PDF). 

00 general chemistry review.

• Lewis Structures
• Ionic and Covalent Bonding
• Chemical Kinetics
• Chemical Equilibria
• Valence Electrons of the First Row Elements
• How Concepts Build Up In Org 1 ("The Pyramid")

01 Bonding, Structure, and Resonance

• How Do We Know Methane (CH4) Is Tetrahedral?
• Hybrid Orbitals and Hybridization
• How To Determine Hybridization: A Shortcut
• Orbital Hybridization And Bond Strengths
• Sigma bonds come in six varieties: Pi bonds come in one
• A Key Skill: How to Calculate Formal Charge
• The Four Intermolecular Forces and How They Affect Boiling Points
• 3 Trends That Affect Boiling Points
• How To Use Electronegativity To Determine Electron Density (and why NOT to trust formal charge)
• Introduction to Resonance
• How To Use Curved Arrows To Interchange Resonance Forms
• Evaluating Resonance Forms (1) - The Rule of Least Charges
• How To Find The Best Resonance Structure By Applying Electronegativity
• Evaluating Resonance Structures With Negative Charges
• Evaluating Resonance Structures With Positive Charge
• Exploring Resonance: Pi-Donation
• Exploring Resonance: Pi-acceptors
• In Summary: Evaluating Resonance Structures
• Drawing Resonance Structures: 3 Common Mistakes To Avoid
• How to apply electronegativity and resonance to understand reactivity
• Bond Hybridization Practice
• Structure and Bonding Practice Quizzes
• Resonance Structures Practice

02 Acid Base Reactions

• Introduction to Acid-Base Reactions
• Acid Base Reactions In Organic Chemistry
• The Stronger The Acid, The Weaker The Conjugate Base
• Walkthrough of Acid-Base Reactions (3) - Acidity Trends
• Five Key Factors That Influence Acidity
• Acid-Base Reactions: Introducing Ka and pKa
• How to Use a pKa Table
• The pKa Table Is Your Friend
• A Handy Rule of Thumb for Acid-Base Reactions
• Acid Base Reactions Are Fast
• pKa Values Span 60 Orders Of Magnitude
• How Protonation and Deprotonation Affect Reactivity
• Acid Base Practice Problems

03 Alkanes and Nomenclature

• Meet the (Most Important) Functional Groups
• Condensed Formulas: Deciphering What the Brackets Mean
• Hidden Hydrogens, Hidden Lone Pairs, Hidden Counterions
• Don't Be Futyl, Learn The Butyls
• Primary, Secondary, Tertiary, Quaternary In Organic Chemistry
• Branching, and Its Affect On Melting and Boiling Points
• The Many, Many Ways of Drawing Butane
• Wedge And Dash Convention For Tetrahedral Carbon
• Common Mistakes in Organic Chemistry: Pentavalent Carbon
• Table of Functional Group Priorities for Nomenclature
• Summary Sheet - Alkane Nomenclature
• Organic Chemistry IUPAC Nomenclature Demystified With A Simple Puzzle Piece Approach
• Boiling Point Quizzes
• Organic Chemistry Nomenclature Quizzes

04 Conformations and Cycloalkanes

• Staggered vs Eclipsed Conformations of Ethane
• Conformational Isomers of Propane
• Newman Projection of Butane (and Gauche Conformation)
• Introduction to Cycloalkanes (1)
• Geometric Isomers In Small Rings: Cis And Trans Cycloalkanes
• Calculation of Ring Strain In Cycloalkanes
• Cycloalkanes - Ring Strain In Cyclopropane And Cyclobutane
• Cyclohexane Conformations
• Cyclohexane Chair Conformation: An Aerial Tour
• How To Draw The Cyclohexane Chair Conformation
• The Cyclohexane Chair Flip
• The Cyclohexane Chair Flip - Energy Diagram
• Substituted Cyclohexanes - Axial vs Equatorial
• Ranking The Bulkiness Of Substituents On Cyclohexanes: "A-Values"
• Cyclohexane Chair Conformation Stability: Which One Is Lower Energy?
• Fused Rings - Cis-Decalin and Trans-Decalin
• Naming Bicyclic Compounds - Fused, Bridged, and Spiro
• Bredt's Rule (And Summary of Cycloalkanes)
• Newman Projection Practice
• Cycloalkanes Practice Problems

05 A Primer On Organic Reactions

• The Most Important Question To Ask When Learning a New Reaction
• Learning New Reactions: How Do The Electrons Move?
• The Third Most Important Question to Ask When Learning A New Reaction
• 7 Factors that stabilize negative charge in organic chemistry
• 7 Factors That Stabilize Positive Charge in Organic Chemistry
• Nucleophiles and Electrophiles
• Curved Arrows (for reactions)
• Curved Arrows (2): Initial Tails and Final Heads
• Nucleophilicity vs. Basicity
• The Three Classes of Nucleophiles
• What Makes A Good Nucleophile?
• What makes a good leaving group?
• 3 Factors That Stabilize Carbocations
• Equilibrium and Energy Relationships
• What's a Transition State?
• Hammond's Postulate
• Learning Organic Chemistry Reactions: A Checklist (PDF)
• Introduction to Free Radical Substitution Reactions
• Introduction to Oxidative Cleavage Reactions

06 Free Radical Reactions

• Bond Dissociation Energies = Homolytic Cleavage
• Free Radical Reactions
• 3 Factors That Stabilize Free Radicals
• What Factors Destabilize Free Radicals?
• Bond Strengths And Radical Stability
• Free Radical Initiation: Why Is "Light" Or "Heat" Required?
• Initiation, Propagation, Termination
• Monochlorination Products Of Propane, Pentane, And Other Alkanes
• Selectivity In Free Radical Reactions
• Selectivity in Free Radical Reactions: Bromination vs. Chlorination
• Halogenation At Tiffany's
• Allylic Bromination
• Bonus Topic: Allylic Rearrangements
• In Summary: Free Radicals
• Synthesis (2) - Reactions of Alkanes
• Free Radicals Practice Quizzes

07 Stereochemistry and Chirality

• Types of Isomers: Constitutional Isomers, Stereoisomers, Enantiomers, and Diastereomers
• How To Draw The Enantiomer Of A Chiral Molecule
• How To Draw A Bond Rotation
• Introduction to Assigning (R) and (S): The Cahn-Ingold-Prelog Rules
• Assigning Cahn-Ingold-Prelog (CIP) Priorities (2) - The Method of Dots
• Enantiomers vs Diastereomers vs The Same? Two Methods For Solving Problems
• Assigning R/S To Newman Projections (And Converting Newman To Line Diagrams)
• How To Determine R and S Configurations On A Fischer Projection
• The Meso Trap
• Optical Rotation, Optical Activity, and Specific Rotation
• Optical Purity and Enantiomeric Excess
• What's a Racemic Mixture?
• Chiral Allenes And Chiral Axes
• Stereochemistry Practice Problems and Quizzes

08 Substitution Reactions

• Introduction to Nucleophilic Substitution Reactions
• Walkthrough of Substitution Reactions (1) - Introduction
• Two Types of Nucleophilic Substitution Reactions
• The SN2 Mechanism
• Why the SN2 Reaction Is Powerful
• The SN1 Mechanism
• The Conjugate Acid Is A Better Leaving Group
• Comparing the SN1 and SN2 Reactions
• Polar Protic? Polar Aprotic? Nonpolar? All About Solvents
• Steric Hindrance is Like a Fat Goalie
• Common Blind Spot: Intramolecular Reactions
• The Conjugate Base is Always a Stronger Nucleophile
• Substitution Practice - SN1
• Substitution Practice - SN2

09 Elimination Reactions

• Elimination Reactions (1): Introduction And The Key Pattern
• Elimination Reactions (2): The Zaitsev Rule
• Elimination Reactions Are Favored By Heat
• Two Elimination Reaction Patterns
• The E1 Reaction
• The E2 Mechanism
• E1 vs E2: Comparing the E1 and E2 Reactions
• Antiperiplanar Relationships: The E2 Reaction and Cyclohexane Rings
• Bulky Bases in Elimination Reactions
• Comparing the E1 vs SN1 Reactions
• Elimination (E1) Reactions With Rearrangements
• E1cB - Elimination (Unimolecular) Conjugate Base
• Elimination (E1) Practice Problems And Solutions
• Elimination (E2) Practice Problems and Solutions

10 Rearrangements

• Introduction to Rearrangement Reactions
• Rearrangement Reactions (1) - Hydride Shifts
• Carbocation Rearrangement Reactions (2) - Alkyl Shifts
• Pinacol Rearrangement
• The SN1, E1, and Alkene Addition Reactions All Pass Through A Carbocation Intermediate

11 SN1/SN2/E1/E2 Decision

• Identifying Where Substitution and Elimination Reactions Happen
• Deciding SN1/SN2/E1/E2 (1) - The Substrate
• Deciding SN1/SN2/E1/E2 (2) - The Nucleophile/Base
• SN1 vs E1 and SN2 vs E2 : The Temperature
• Deciding SN1/SN2/E1/E2 - The Solvent
• Wrapup: The Key Factors For Determining SN1/SN2/E1/E2
• Alkyl Halide Reaction Map And Summary
• SN1 SN2 E1 E2 Practice Problems

12 Alkene Reactions

• E and Z Notation For Alkenes (+ Cis/Trans)
• Alkene Stability
• Alkene Addition Reactions: "Regioselectivity" and "Stereoselectivity" (Syn/Anti)
• Stereoselective and Stereospecific Reactions
• Hydrohalogenation of Alkenes and Markovnikov's Rule
• Hydration of Alkenes With Aqueous Acid
• Rearrangements in Alkene Addition Reactions
• Halogenation of Alkenes and Halohydrin Formation
• Oxymercuration Demercuration of Alkenes
• Hydroboration Oxidation of Alkenes
• m-CPBA (meta-chloroperoxybenzoic acid)
• OsO4 (Osmium Tetroxide) for Dihydroxylation of Alkenes
• Palladium on Carbon (Pd/C) for Catalytic Hydrogenation of Alkenes
• Cyclopropanation of Alkenes
• A Fourth Alkene Addition Pattern - Free Radical Addition
• Alkene Reactions: Ozonolysis
• Summary: Three Key Families Of Alkene Reaction Mechanisms
• Synthesis (4) - Alkene Reaction Map, Including Alkyl Halide Reactions
• Alkene Reactions Practice Problems

13 Alkyne Reactions

• Acetylides from Alkynes, And Substitution Reactions of Acetylides
• Partial Reduction of Alkynes With Lindlar's Catalyst
• Partial Reduction of Alkynes With Na/NH3 To Obtain Trans Alkenes
• Alkyne Hydroboration With "R2BH"
• Hydration and Oxymercuration of Alkynes
• Hydrohalogenation of Alkynes
• Alkyne Halogenation: Bromination, Chlorination, and Iodination of Alkynes
• Alkyne Reactions - The "Concerted" Pathway
• Alkenes To Alkynes Via Halogenation And Elimination Reactions
• Alkynes Are A Blank Canvas
• Synthesis (5) - Reactions of Alkynes
• Alkyne Reactions Practice Problems With Answers

14 Alcohols, Epoxides and Ethers

• Alcohols - Nomenclature and Properties
• Alcohols Can Act As Acids Or Bases (And Why It Matters)
• Alcohols - Acidity and Basicity
• The Williamson Ether Synthesis
• Ethers From Alkenes, Tertiary Alkyl Halides and Alkoxymercuration
• Alcohols To Ethers via Acid Catalysis
• Cleavage Of Ethers With Acid
• Epoxides - The Outlier Of The Ether Family
• Opening of Epoxides With Acid
• Epoxide Ring Opening With Base
• Making Alkyl Halides From Alcohols
• Tosylates And Mesylates
• PBr3 and SOCl2
• Elimination Reactions of Alcohols
• Elimination of Alcohols To Alkenes With POCl3
• Alcohol Oxidation: "Strong" and "Weak" Oxidants
• Demystifying The Mechanisms of Alcohol Oxidations
• Protecting Groups For Alcohols
• Thiols And Thioethers
• Calculating the oxidation state of a carbon
• Oxidation and Reduction in Organic Chemistry
• Oxidation Ladders
• SOCl2 Mechanism For Alcohols To Alkyl Halides: SN2 versus SNi
• Alcohol Reactions Roadmap (PDF)
• Alcohol Reaction Practice Problems
• Epoxide Reaction Quizzes
• Oxidation and Reduction Practice Quizzes

15 Organometallics

• What's An Organometallic?
• Formation of Grignard and Organolithium Reagents
• Organometallics Are Strong Bases
• Reactions of Grignard Reagents
• Protecting Groups In Grignard Reactions
• Synthesis Problems Involving Grignard Reagents
• Grignard Reactions And Synthesis (2)
• Organocuprates (Gilman Reagents): How They're Made
• Gilman Reagents (Organocuprates): What They're Used For
• The Heck, Suzuki, and Olefin Metathesis Reactions (And Why They Don't Belong In Most Introductory Organic Chemistry Courses)
• Reaction Map: Reactions of Organometallics
• Grignard Practice Problems

16 Spectroscopy

• Degrees of Unsaturation (or IHD, Index of Hydrogen Deficiency)
• Conjugation And Color (+ How Bleach Works)
• Introduction To UV-Vis Spectroscopy
• UV-Vis Spectroscopy: Absorbance of Carbonyls
• UV-Vis Spectroscopy: Practice Questions
• Bond Vibrations, Infrared Spectroscopy, and the "Ball and Spring" Model
• Infrared Spectroscopy: A Quick Primer On Interpreting Spectra
• IR Spectroscopy: 4 Practice Problems
• 1H NMR: How Many Signals?
• Homotopic, Enantiotopic, Diastereotopic
• Diastereotopic Protons in 1H NMR Spectroscopy: Examples
• C13 NMR - How Many Signals
• Liquid Gold: Pheromones In Doe Urine
• Natural Product Isolation (1) - Extraction
• Natural Product Isolation (2) - Purification Techniques, An Overview
• Structure Determination Case Study: Deer Tarsal Gland Pheromone

17 Dienes and MO Theory

• What To Expect In Organic Chemistry 2
• Are these molecules conjugated?
• Conjugation And Resonance In Organic Chemistry
• Bonding And Antibonding Pi Orbitals
• Molecular Orbitals of The Allyl Cation, Allyl Radical, and Allyl Anion
• Pi Molecular Orbitals of Butadiene
• Reactions of Dienes: 1,2 and 1,4 Addition
• Thermodynamic and Kinetic Products
• More On 1,2 and 1,4 Additions To Dienes
• s-cis and s-trans
• The Diels-Alder Reaction
• Cyclic Dienes and Dienophiles in the Diels-Alder Reaction
• Stereochemistry of the Diels-Alder Reaction
• Exo vs Endo Products In The Diels Alder: How To Tell Them Apart
• HOMO and LUMO In the Diels Alder Reaction
• Why Are Endo vs Exo Products Favored in the Diels-Alder Reaction?
• Diels-Alder Reaction: Kinetic and Thermodynamic Control
• The Retro Diels-Alder Reaction
• The Intramolecular Diels Alder Reaction
• Regiochemistry In The Diels-Alder Reaction
• The Cope and Claisen Rearrangements
• Electrocyclic Reactions
• Electrocyclic Ring Opening And Closure (2) - Six (or Eight) Pi Electrons
• Diels Alder Practice Problems
• Molecular Orbital Theory Practice

18 Aromaticity

• Introduction To Aromaticity
• Rules For Aromaticity
• Huckel's Rule: What Does 4n+2 Mean?
• Aromatic, Non-Aromatic, or Antiaromatic? Some Practice Problems
• Antiaromatic Compounds and Antiaromaticity
• The Pi Molecular Orbitals of Benzene
• The Pi Molecular Orbitals of Cyclobutadiene
• Frost Circles
• Aromaticity Practice Quizzes

19 Reactions of Aromatic Molecules

• Electrophilic Aromatic Substitution: Introduction
• Activating and Deactivating Groups In Electrophilic Aromatic Substitution
• Electrophilic Aromatic Substitution - The Mechanism
• Ortho-, Para- and Meta- Directors in Electrophilic Aromatic Substitution
• Understanding Ortho, Para, and Meta Directors
• Why are halogens ortho- para- directors?
• Disubstituted Benzenes: The Strongest Electron-Donor "Wins"
• Electrophilic Aromatic Substitutions (1) - Halogenation of Benzene
• Electrophilic Aromatic Substitutions (2) - Nitration and Sulfonation
• EAS Reactions (3) - Friedel-Crafts Acylation and Friedel-Crafts Alkylation
• Intramolecular Friedel-Crafts Reactions
• Nucleophilic Aromatic Substitution (NAS)
• Nucleophilic Aromatic Substitution (2) - The Benzyne Mechanism
• Reactions on the "Benzylic" Carbon: Bromination And Oxidation
• The Wolff-Kishner, Clemmensen, And Other Carbonyl Reductions
• More Reactions on the Aromatic Sidechain: Reduction of Nitro Groups and the Baeyer Villiger
• Aromatic Synthesis (1) - "Order Of Operations"
• Synthesis of Benzene Derivatives (2) - Polarity Reversal
• Aromatic Synthesis (3) - Sulfonyl Blocking Groups
• Birch Reduction
• Synthesis (7): Reaction Map of Benzene and Related Aromatic Compounds
• Aromatic Reactions and Synthesis Practice
• Electrophilic Aromatic Substitution Practice Problems

20 Aldehydes and Ketones

• What's The Alpha Carbon In Carbonyl Compounds?
• Nucleophilic Addition To Carbonyls
• Aldehydes and Ketones: 14 Reactions With The Same Mechanism
• Sodium Borohydride (NaBH4) Reduction of Aldehydes and Ketones
• Grignard Reagents For Addition To Aldehydes and Ketones
• Wittig Reaction
• Hydrates, Hemiacetals, and Acetals
• Imines - Properties, Formation, Reactions, and Mechanisms
• All About Enamines
• Breaking Down Carbonyl Reaction Mechanisms: Reactions of Anionic Nucleophiles (Part 2)
• Aldehydes Ketones Reaction Practice

21 Carboxylic Acid Derivatives

• Nucleophilic Acyl Substitution (With Negatively Charged Nucleophiles)
• Addition-Elimination Mechanisms With Neutral Nucleophiles (Including Acid Catalysis)
• Basic Hydrolysis of Esters - Saponification
• Transesterification
• Proton Transfer
• Fischer Esterification - Carboxylic Acid to Ester Under Acidic Conditions
• Lithium Aluminum Hydride (LiAlH4) For Reduction of Carboxylic Acid Derivatives
• LiAlH[Ot-Bu]3 For The Reduction of Acid Halides To Aldehydes
• Di-isobutyl Aluminum Hydride (DIBAL) For The Partial Reduction of Esters and Nitriles
• Amide Hydrolysis
• Thionyl Chloride (SOCl2)
• Diazomethane (CH2N2)
• Carbonyl Chemistry: Learn Six Mechanisms For the Price Of One
• Making Music With Mechanisms (PADPED)
• Carboxylic Acid Derivatives Practice Questions

22 Enols and Enolates

• Keto-Enol Tautomerism
• Enolates - Formation, Stability, and Simple Reactions
• Kinetic Versus Thermodynamic Enolates
• Aldol Addition and Condensation Reactions
• Reactions of Enols - Acid-Catalyzed Aldol, Halogenation, and Mannich Reactions
• Claisen Condensation and Dieckmann Condensation
• Decarboxylation
• The Malonic Ester and Acetoacetic Ester Synthesis
• The Michael Addition Reaction and Conjugate Addition
• The Robinson Annulation
• Haloform Reaction
• The Hell–Volhard–Zelinsky Reaction
• Enols and Enolates Practice Quizzes
• The Amide Functional Group: Properties, Synthesis, and Nomenclature
• Basicity of Amines And pKaH
• 5 Key Basicity Trends of Amines
• The Mesomeric Effect And Aromatic Amines
• Nucleophilicity of Amines
• Alkylation of Amines (Sucks!)
• Reductive Amination
• The Gabriel Synthesis
• Some Reactions of Azides
• The Hofmann Elimination
• The Hofmann and Curtius Rearrangements
• The Cope Elimination
• Protecting Groups for Amines - Carbamates
• The Strecker Synthesis of Amino Acids
• Introduction to Peptide Synthesis
• Reactions of Diazonium Salts: Sandmeyer and Related Reactions
• Amine Practice Questions

24 Carbohydrates

• D and L Notation For Sugars
• Pyranoses and Furanoses: Ring-Chain Tautomerism In Sugars
• What is Mutarotation?
• Reducing Sugars
• The Big Damn Post Of Carbohydrate-Related Chemistry Definitions
• The Haworth Projection
• Converting a Fischer Projection To A Haworth (And Vice Versa)
• Reactions of Sugars: Glycosylation and Protection
• The Ruff Degradation and Kiliani-Fischer Synthesis
• Isoelectric Points of Amino Acids (and How To Calculate Them)
• Carbohydrates Practice
• Amino Acid Quizzes

25 Fun and Miscellaneous

• A Gallery of Some Interesting Molecules From Nature
• Screw Organic Chemistry, I'm Just Going To Write About Cats
• On Cats, Part 1: Conformations and Configurations
• On Cats, Part 2: Cat Line Diagrams
• On Cats, Part 4: Enantiocats
• On Cats, Part 6: Stereocenters
• Organic Chemistry Is Shit
• The Organic Chemistry Behind "The Pill"
• Maybe they should call them, "Formal Wins" ?
• Why Do Organic Chemists Use Kilocalories?
• The Principle of Least Effort
• Organic Chemistry GIFS - Resonance Forms
• Reproducibility In Organic Chemistry
• What Holds The Nucleus Together?
• How Reactions Are Like Music
• Organic Chemistry and the New MCAT

26 Organic Chemistry Tips and Tricks

• Common Mistakes: Formal Charges Can Mislead
• Partial Charges Give Clues About Electron Flow
• Draw The Ugly Version First
• Organic Chemistry Study Tips: Learn the Trends
• The 8 Types of Arrows In Organic Chemistry, Explained
• Top 10 Skills To Master Before An Organic Chemistry 2 Final
• Common Mistakes with Carbonyls: Carboxylic Acids... Are Acids!
• Planning Organic Synthesis With "Reaction Maps"
• Alkene Addition Pattern #1: The "Carbocation Pathway"
• Alkene Addition Pattern #2: The "Three-Membered Ring" Pathway
• Alkene Addition Pattern #3: The "Concerted" Pathway
• Number Your Carbons!
• The 4 Major Classes of Reactions in Org 1
• How (and why) electrons flow
• Grossman's Rule
• Three Exam Tips
• A 3-Step Method For Thinking Through Synthesis Problems
• Putting It Together
• Putting Diels-Alder Products in Perspective
• The Ups and Downs of Cyclohexanes
• The Most Annoying Exceptions in Org 1 (Part 1)
• The Most Annoying Exceptions in Org 1 (Part 2)
• The Marriage May Be Bad, But the Divorce Still Costs Money
• 9 Nomenclature Conventions To Know
• Nucleophile attacks Electrophile

27 Case Studies of Successful O-Chem Students

• Success Stories: How Corina Got The The "Hard" Professor - And Got An A+ Anyway
• How Helena Aced Organic Chemistry
• From a "Drop" To B+ in Org 2 – How A Hard Working Student Turned It Around
• How Serge Aced Organic Chemistry
• Success Stories: How Zach Aced Organic Chemistry 1
• Success Stories: How Kari Went From C– to B+
• How Esther Bounced Back From a "C" To Get A's In Organic Chemistry 1 And 2
• How Tyrell Got The Highest Grade In Her Organic Chemistry Course
• This Is Why Students Use Flashcards
• Success Stories: How Stu Aced Organic Chemistry
• How John Pulled Up His Organic Chemistry Exam Grades
• Success Stories: How Nathan Aced Organic Chemistry (Without It Taking Over His Life)
• How Chris Aced Org 1 and Org 2
• Interview: How Jay Got an A+ In Organic Chemistry
• How to Do Well in Organic Chemistry: One Student's Advice
• "America's Top TA" Shares His Secrets For Teaching O-Chem
• "Organic Chemistry Is Like..." - A Few Metaphors
• How To Do Well In Organic Chemistry: Advice From A Tutor
• Guest post: "I went from being afraid of tests to actually looking forward to them".

Comment section

2 thoughts on “ reaction maps now available ”.

Are reaction maps included in the MOC membership

No they are not.

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Comparison of Soil Carbon Dynamics Between Restored Prairie and Agricultural Soils in the U.S. Midwest

Globally, soils hold more carbon than both the atmosphere and aboveground terrestrial biosphere combined. Changes in land use and land cover have the potential to alter soil carbon cycling throughout the soil profile, from the surface to meters deep, yet most studies focus only on the near surface impact ( 3 and C 4 photosynthetic pathway plant community composition. Comparative analysis of edaphic properties and soil carbon suggests that deep loess deposits in Nebraska permit enhanced water infiltration and SOC deposition to depths of ~100 cm in 60 years of prairie restoration. In Illinois, poorly drained, clay/lime rich soils on glacial till and a younger restored prairie age (15 years) restricted the influence of prairie restoration to the upper 30 cm. Comparing the δ 13 C values of SOC and SIC in each system demonstrated that SIC at each site is likely of lithogenic origin. This work indicates that the magnitude of influence of restoration management is dependent on edaphic properties inherited from geological and geomorphological controls. Future work should quantify root structures and redox properties to better understand the influence of rooting depth on soil carbon concentrations. Fast-cycling C dynamics can be assessed using continuous, in-situ CO 2 and O 2 soil gas concentration changes. The secondary objective of my thesis was to determine if manual, low temporal resolution gas sampling and analysis are a low cost and effective means of measuring soil O 2 and CO 2 , by comparing it with data from in-situ continuous (hourly) sensors. Manual analysis of soil CO 2 and O 2 from field replicates of buried gas collection cups resulted in measurement differences from the continuous sensors. Measuring CO2 concentration with manual methods often resulted in higher concentrations than hourly, continuous measurements across all sites. Additionally, O 2 concentrations measured by manual methods were higher than hourly values in the restored prairie and less in agricultural sites. A variety of spatial variability, pressure perturbations, calibration offsets, and system leakage influences on both analysis methods could cause the discrepancy.

NSF Grant 1331906

Degree type.

• Master of Science
• Earth, Atmospheric and Planetary Sciences

Campus location

• West Lafayette

Advisor/Supervisor/Committee Chair

Additional committee member 2, additional committee member 3, additional committee member 4, additional committee member 5, usage metrics.

• Environmental biogeochemistry
• Soil chemistry and soil carbon sequestration (excl. carbon sequestration science)

Graduate or Licenciate in Chemistry with knowledge and previous experience in organic synthesis and photochemical/photophysical characterization of organic compounds

Job Information

Offer description.

On 7 of May of 2024, the University of Huelva issues the following resolution for the recruitment of a University Graduate commissioned by the Proyect "Diarylethene photoswitches in the focus of advanced photonic and supramolecular applications (FocusDAE) - ref. PID2020-119992GB-I00".

Principal Reseacher: Mr. [PhD] Pischel

Requirements

Additional information.

Amount: 1.144,19 € gross, monthly

Duties and responsabilities:

a) Synthesis of new photoactive systems based on diarylethenes;

b) Photochemical/photophysical characterization of photoactive systems;

c) Interpretation of experimental data;

d) Literature search;

e) Management of collaborations with national and international groups;

f) Summary of results in form of reports/congress contributions/publications;

g) Participation in laboratory management.

Master in Chemistry with Master Thesis in a field of relevance for the research project

Merits based tender process (maximum 10 points):

• Academic achievement: globally as well as specifically in Organic Chemistry courses (max. 2 points);
• Professional experience: focussed on research experience, topics and relavance of realized works, scientific contributions, project participations (max. 3 points);
• Specific training: languages (max. 1 point);
• Interview: organized by videoconference and oriented to know and concretize aspects of the training, experience, and motivation of the candidate (max. 2 points).

In compliance with Section 8 of the Resolution of the University of Huelva of December 12, 2023, which establishes the legal basis and schedule for the publication of public tenders for personnel contracts for the realisation and execution of projects, grants, agreements and contracts with third parties of fixed duration for the year 2023 ( BOJA No. 239 of December 15, 2023 ), the application must be accompanied by the following documents in order for the applications to be included in the lists of admitted and excluded applicants and be submitted to an oficial Registry :

A. Photocopy or digitised copy of passport, National Identity Number (DNI), Foreigner Identity Number (NIE), or equivalent document for citizens of the European Union.

B. Photocopy or digitised copy of degree certificate.

C. Photocopy or digitised copy of certified academic transcript listing courses and grades received in the degree.

E. Photocopy or digitised copy of documentation verifying merits included in resume.

F. If the application is submitted to a registry other than that of the University of Huelva, a scanned copy must be sent to the following email address [email protected] , along with receipt of submission, in order for the applications to be included in the lists of admitted and excluded applicants.

Work Location(s)

Where to apply.